| Sequence ID | dm3.chr2L |
|---|---|
| Location | 11,196,983 – 11,197,076 |
| Length | 93 |
| Max. P | 0.901694 |
| Location | 11,196,983 – 11,197,076 |
|---|---|
| Length | 93 |
| Sequences | 5 |
| Columns | 101 |
| Reading direction | reverse |
| Mean pairwise identity | 82.47 |
| Shannon entropy | 0.28155 |
| G+C content | 0.61522 |
| Mean single sequence MFE | -38.44 |
| Consensus MFE | -29.12 |
| Energy contribution | -28.48 |
| Covariance contribution | -0.64 |
| Combinations/Pair | 1.13 |
| Mean z-score | -1.97 |
| Structure conservation index | 0.76 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.16 |
| SVM RNA-class probability | 0.901694 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 11196983 93 - 23011544 GAUGAGAGUUGAGAGCCAAGAACUGGUUCCGUCCGAAUGA--------CCGAUCGGCAAUUGGCUUGGGGCGGGGCCAGGUGGGCCACUGUAGCGGUCCGA (((....)))............((((((((((((.((.(.--------(((((.....)))))))).)))))))))))).((((((.(....).)))))). ( -37.90, z-score = -1.41, R) >droSim1.chr2L 10998325 93 - 22036055 AAUGAGAGUUGAGAGCCAAGAACUGGUUCCGUCCGAAUGA--------CCGAUCGGCAAUUGGCUUGGGGCGGGGCCAGGUGGGCCACUGUCGCGGGCCGA .......(((((((((((.....)))))).(((.....))--------)...)))))..((((((((.(((((((((.....)))).))))).)))))))) ( -40.10, z-score = -1.49, R) >droSec1.super_3 6598108 93 - 7220098 GAUGUGAGUGGAGAGCCAAGAACUGGUUCCGUCCGAAUGA--------CCGAUCGGCAAUUGGCUUGGGGCGGGGCCAGGUGGGCCACUGUCGCGGGCCGA ..(((((((((....(((....((((((((((((.((.(.--------(((((.....)))))))).)))))))))))).))).))))..)))))...... ( -40.50, z-score = -1.26, R) >droYak2.chr2L 7595694 86 - 22324452 AAUGAGAGGUGGCAGCCAAGAACUGGUUCCGUCCGAAUGACCGAUCGUCCGAUCGGCAAUUGGCUUGGGGCGGGGCCAGGU-GGUGA-------------- ..............((((....((((((((((((.((((.((((((....))))))))......)).)))))))))))).)-)))..-------------- ( -37.80, z-score = -2.20, R) >droEre2.scaffold_4929 12395451 78 + 26641161 AAUGAGAGGUGAGAGCCAAGAACUGGUUCCGUCCGAAUGA--------CCGAUCGGCAAUUGGCUUGGGGCGGAGCCAGGU-GGCCA-------------- ............(.((((....((((((((((((.((.(.--------(((((.....)))))))).)))))))))))).)-)))).-------------- ( -35.90, z-score = -3.47, R) >consensus AAUGAGAGUUGAGAGCCAAGAACUGGUUCCGUCCGAAUGA________CCGAUCGGCAAUUGGCUUGGGGCGGGGCCAGGUGGGCCACUGU_GCGG_CCGA ............(.(((.....((((((((((((((.((..........)).))(((.....)))..))))))))))))...))))............... (-29.12 = -28.48 + -0.64)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:31:45 2011