| Sequence ID | dm3.chr2L |
|---|---|
| Location | 987,661 – 987,721 |
| Length | 60 |
| Max. P | 0.633363 |
| Location | 987,661 – 987,721 |
|---|---|
| Length | 60 |
| Sequences | 6 |
| Columns | 60 |
| Reading direction | reverse |
| Mean pairwise identity | 68.68 |
| Shannon entropy | 0.60046 |
| G+C content | 0.48863 |
| Mean single sequence MFE | -14.84 |
| Consensus MFE | -7.33 |
| Energy contribution | -8.75 |
| Covariance contribution | 1.42 |
| Combinations/Pair | 1.25 |
| Mean z-score | -0.96 |
| Structure conservation index | 0.49 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.30 |
| SVM RNA-class probability | 0.633363 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 987661 60 - 23011544 CAAAGUCAUUAUGCCUUUACAGGGUACGAACAAUCAGGGGCACUGUUUUCUCCUGUAACU ................((((((((...(((....(((.....)))..))))))))))).. ( -11.20, z-score = -0.29, R) >droEre2.scaffold_4929 1041134 59 - 26641161 CAUAAUCCUCCCACCUUUGCAGGGUAGCAACAAUCAGGGGCACUG-CUGCUCCUGCAACU ................(((((((((((((..............))-)))).))))))).. ( -18.34, z-score = -1.49, R) >droYak2.chr2L 971466 59 - 22324452 CAUAAUCAUAGCACCUUUACUGGGUACGAACAAUCAGGGGCACUG-UUGCUGCUGCAACU ..........((.((((.(.((........)).).))))))...(-((((....))))). ( -12.50, z-score = -0.33, R) >droSec1.super_14 950932 59 - 2068291 CAGCGUCAUAAUGCCUUUACAGGGUACGAACAAUCAGGGGCACUG-UUGCUCCUGCAACU ..((.......(((((.....))))).........(((((((...-.))))))))).... ( -16.20, z-score = -1.22, R) >droSim1.chr2L 971422 59 - 22036055 CAGAGUCAUUAUGCCUUUACAGGGUACGAACAAUCAGGGGCACUG-UUGCUCCUGCAACU ........(..(((((.....)))))..).....((((((((...-.))))))))..... ( -16.50, z-score = -1.37, R) >droWil1.scaffold_180772 6815885 54 + 8906247 --AAACAGCGGUGC--UUGUAGAGAGCCUAGAGCAAAAAAUCAUGGAUGCUGCCGUUG-- --...(((((((((--((.....))))....((((............)))))))))))-- ( -14.30, z-score = -1.06, R) >consensus CAAAAUCAUAAUGCCUUUACAGGGUACGAACAAUCAGGGGCACUG_UUGCUCCUGCAACU ............((((.....)))).........((((((((.....))))))))..... ( -7.33 = -8.75 + 1.42)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:07:28 2011