| Sequence ID | dm3.chrX |
|---|---|
| Location | 12,424,473 – 12,424,568 |
| Length | 95 |
| Max. P | 0.732382 |
| Location | 12,424,473 – 12,424,568 |
|---|---|
| Length | 95 |
| Sequences | 6 |
| Columns | 105 |
| Reading direction | reverse |
| Mean pairwise identity | 72.79 |
| Shannon entropy | 0.50643 |
| G+C content | 0.42926 |
| Mean single sequence MFE | -20.19 |
| Consensus MFE | -10.45 |
| Energy contribution | -11.12 |
| Covariance contribution | 0.67 |
| Combinations/Pair | 1.23 |
| Mean z-score | -1.40 |
| Structure conservation index | 0.52 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.53 |
| SVM RNA-class probability | 0.732382 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 12424473 95 - 22422827 -AAGUUUGGCUUAGGGCGGUAAUUUGUUGCCCGCUUUAAUCCAAUC---UCUAUUUCCAUCAGCU-GCUAAGCUCUUCCUCUUUUCCCAUCUUAAUCUAU----- -.((.((((.((((((((((((....))).))))))))).)))).)---)...........((((-....))))..........................----- ( -19.60, z-score = -2.04, R) >droSim1.chrX 9554801 96 - 17042790 -AAGUUUGGCUUAGGGCGGUAAUUUGUUGCCCGCUUUAAUCCAUCUCGAUUCGUUUCCAUCAGCU-GCUAAGCUCUUCCGCUUGUUCCAUCUCAAUUU------- -.((((((((((((((((((((....))).)))))))))........(((........)))....-))))))))........................------- ( -19.40, z-score = -0.64, R) >droSec1.super_21 180547 95 - 1102487 -AAGUUUGGCUUAGGGCGGUAAUUUGUUGCCCGCUUUAAUCCAUCUCGAUUCGUUUCCAUCAGCU-GCUAAGCACUUUCGCUUUUUCCAUCUCAAUC-------- -..(((((((((((((((((((....))).)))))))))........(((........)))....-)))))))........................-------- ( -19.30, z-score = -0.98, R) >droYak2.chrX 6700728 103 - 21770863 -AAGUUUGGCUUAGGGCGGUAAUUUGUUGGCCACUUUAAUCCAUCUCGAUGCGUUUCCAUCAGCU-GCUAAGCUCUUCCGCUUUUCCUAUGCUCCCUUCCCAAUC -....((((...((((.((((.......(((................((((......))))((((-....)))).....))).......))))))))..)))).. ( -20.94, z-score = -0.13, R) >droEre2.scaffold_4690 4313601 101 + 18748788 -AAGUUUGGCUUAAGGCGGUAAUUUGUUACCCAC-UUAAUCCAUCUCGAUUCGUUUCCAUCAGCU-GCUAAGCUC-UCCGCUUUUCCUAUUCUCCCUUCCCAAUA -.(((((((((((((..(((((....)))))..)-))))........(((........)))....-)))))))).-............................. ( -16.50, z-score = -1.49, R) >droAna3.scaffold_13117 2486913 88 + 5790199 AAGUUUUGGUCUAAGCCGGUAAUUUGUUUUUGGCUUUAAUCUUAACCAAUUCAUUGCCAUCAGUUGGCUAAGCAUUUUGGCCAAAAAC----------------- ((((((((((....))))).)))))((((((((((..(((((((.((((((.((....)).)))))).)))).)))..))))))))))----------------- ( -25.40, z-score = -3.10, R) >consensus _AAGUUUGGCUUAGGGCGGUAAUUUGUUGCCCGCUUUAAUCCAUCUCGAUUCGUUUCCAUCAGCU_GCUAAGCUCUUCCGCUUUUCCCAUCUUAAUUU_______ ...(((((((((((((((((((....))).))))))))).............(((......)))..)))))))................................ (-10.45 = -11.12 + 0.67)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:37:33 2011