| Sequence ID | dm3.chrX |
|---|---|
| Location | 12,409,728 – 12,409,822 |
| Length | 94 |
| Max. P | 0.500000 |
| Location | 12,409,728 – 12,409,822 |
|---|---|
| Length | 94 |
| Sequences | 11 |
| Columns | 103 |
| Reading direction | reverse |
| Mean pairwise identity | 65.75 |
| Shannon entropy | 0.76769 |
| G+C content | 0.55335 |
| Mean single sequence MFE | -24.67 |
| Consensus MFE | -11.51 |
| Energy contribution | -11.29 |
| Covariance contribution | -0.22 |
| Combinations/Pair | 1.57 |
| Mean z-score | -0.27 |
| Structure conservation index | 0.47 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.01 |
| SVM RNA-class probability | 0.500000 |
| Prediction | OTHER |
Download alignment: ClustalW | MAF
>dm3.chrX 12409728 94 - 22422827 ---GUGCUUA-----CUCUGGCAUACUCACCCAUUCCUAUCAAGUUCCUGUGUGGA-CUGGGCAUUGCGCAGUUUUCCGGGCCCAUAGCAGUGCUCCACCUCG ---(((((..-----....))))).......((((.((((...(..((((.(..((-(((.((...)).)))))..)))))..))))).)))).......... ( -22.40, z-score = 0.74, R) >droSim1.chrX 9540240 97 - 17042790 ---GUGCUUACC--CCCCUGGCAUACUCACCCAUUCCUAUCCAGUUCCUGUGUGGA-CUGGGCAUUGCGCAGUUUUCCGGGCCCGUAGCAGUGCUCCACCUCG ---(..(((((.--..(((((...(((.............(((((.((.....)))-))))((.....)))))...)))))...)))..))..)......... ( -24.00, z-score = 0.57, R) >droSec1.super_21 165961 94 - 1102487 ---GUGCUUA-----CUCUGGCAUACUCACCCAUUCCUACCCAGUUCCUGUGUGGA-CUGGGCAUUGCGCAGUUUACCGGGCCCGUAGCAGUGCUCCACCUCG ---(((((..-----....))))).......((((.((((...(..((((.(((((-(((.((...)).))))))))))))..))))).)))).......... ( -27.80, z-score = -0.40, R) >droYak2.chrX 6685188 94 - 21770863 ---GUGUUAA-----CUUUGGUAUGCUCACCCAUUCCUAUCGAGUUCCUGUGUGGA-CUGGGCAUUGCGCAGUUUUCCGGGCCCGUAGCAGUGCUCCACCUCG ---..(((.(-----(...((...((((.............)))).))...)).))-)((((((((((((.(((.....)))..)).))))))).)))..... ( -22.02, z-score = 1.20, R) >droEre2.scaffold_4690 4299508 94 + 18748788 ---GCGCCGA-----ACGUGGCAUACUCACCCAUUCCUAUCCAGCUCCUGUGUGGA-CUGGGCAUUGCGCAGUUUUCCGGGCCCGUAGCAGUGCUCCACCUCG ---....(((-----..((((...................((((.(((.....)))-))))(((((((((.(((.....)))..)).))))))).)))).))) ( -25.60, z-score = 1.04, R) >droAna3.scaffold_12929 689643 79 + 3277472 -----------------------UACUAACCCAUUCCUGUCCAGCUCCUGAGUGGA-CUGGGCAUUGCGCAGCUUCCCAGGACCAUAGCAGUGCUCCACCUCC -----------------------..............(((((((.(((.....)))-)))))))..((((.(((((....))....))).))))......... ( -22.30, z-score = -0.53, R) >dp4.chrXL_group1a 3152909 99 - 9151740 ---AUGCUUGAUGGACGGCGCACUACUCACCCGUUUCUGUCGAGCUCCUGCGUGGA-CUGGGCAUUGCGAAGUUUUCCGGGGCCAUAGCAGUGCUCCUCCUCG ---..(((((((((((((.(.........))))..)))))))))).....((.(((-..(((((((((...((((....))))....))))))))).))).)) ( -33.10, z-score = -0.08, R) >droWil1.scaffold_180777 4205968 89 - 4753960 ------------CUCUCUUUUUGCAUU-ACCAAUCUCUAUCCAGCUCUAGGGUAGA-CUGGGCAUUCCGUAAUUUGCCUGGUCCAUAGCAAUGCUCCACUUCG ------------..........(((((-.........(((((.......)))))((-(..((((..........))))..)))......)))))......... ( -21.30, z-score = -1.98, R) >droVir3.scaffold_12928 945941 102 - 7717345 GUACUUCCGUUACAAAGUAAUCCUAUUCACCUCUCUCUCUCCAGCUCCAGCGUAGA-UUGUGCAUUGCGCAAUUUGCCUGGUCCGUAGCAGUGCUCCACCUCG (((((...(((((..((((....))))................(..((((.(((((-((((((...)))))))))))))))..)))))))))))......... ( -27.20, z-score = -4.27, R) >droGri2.scaffold_14853 2562068 100 + 10151454 --GAUUUUCUGAGUAACGAAUGUCUCUCACCUCUCCCGCUCCAGCUCAAGUGUGGA-UUGUGCAUUGCGCAAUUUACCAGGUCCAUAGCAGUGUUCCACCUCG --.......((((..((....))..))))........((....))....(.(((((-((((((...)))))))))))).((..(((....)))..))...... ( -21.10, z-score = -0.33, R) >anoGam1.chr3L 27997605 98 + 41284009 ---UUGCUUAG--UCCCACUUAAUCGCUGCCUAUCGUACCUUGGCGAAAGACUAGAGUUGGUCAGGGCGUCGCACAGUUCGCUGAUCGAUUUGGUCGACCGUA ---.......(--((........(((((..............)))))..(((((((.((((((((.(...(.....)..).)))))))))))))))))).... ( -24.54, z-score = 1.02, R) >consensus ___GUGCUUA_____CCCUGGCAUACUCACCCAUUCCUAUCCAGCUCCUGUGUGGA_CUGGGCAUUGCGCAGUUUUCCGGGCCCAUAGCAGUGCUCCACCUCG ..........................................((.(((.....))).))(((((((((...................)))))))))....... (-11.51 = -11.29 + -0.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:37:32 2011