| Sequence ID | dm3.chrX |
|---|---|
| Location | 12,408,017 – 12,408,114 |
| Length | 97 |
| Max. P | 0.956553 |
| Location | 12,408,017 – 12,408,114 |
|---|---|
| Length | 97 |
| Sequences | 4 |
| Columns | 97 |
| Reading direction | reverse |
| Mean pairwise identity | 95.51 |
| Shannon entropy | 0.06827 |
| G+C content | 0.52207 |
| Mean single sequence MFE | -30.75 |
| Consensus MFE | -30.17 |
| Energy contribution | -30.43 |
| Covariance contribution | 0.25 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.86 |
| Structure conservation index | 0.98 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.63 |
| SVM RNA-class probability | 0.956553 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 12408017 97 - 22422827 AUCGGAGGAGACAAAUCCGCUGUUUGCAUAAUCCGAUUGGCUUCGAUCGUGCUGCCCAAAUGAUCCGCCCGAAAACCACACACGGCGUGUGGUUCAA (((((((((......)))((.....))....)))))).(((...((((((.........)))))).)))....((((((((.....))))))))... ( -31.60, z-score = -1.52, R) >droSec1.super_21 164277 96 - 1102487 AUCGGAGGAGACAAAUCCGCUGUUUGCAUAAUCCGAUUGGCUUCGAUCGUGCUGCCCAAAUGAUCCGCCCG-AAACCACACACGGCGUGUGGUUCAG (((((((((......)))((.....))....)))))).(((...((((((.........)))))).))).(-((.((((((.....))))))))).. ( -32.30, z-score = -1.74, R) >droYak2.chrX 6683498 96 - 21770863 AUCGGAGGAGACAAAUCCGCUGUUUGCAUAAUCCGAUUGGCUUCGAUCGUGCUGCCCAAAUGAUCCGCCUA-AAACCACACACGUCGUGUGGUUCCG (((((((((......)))((.....))....)))))).(((...((((((.........)))))).)))..-.((((((((.....))))))))... ( -32.00, z-score = -2.68, R) >droEre2.scaffold_4690 4297800 96 + 18748788 AUCGGAGGAGACAAAUCCGCUGUUUGCAUAAUCCGAUUGGCUUCGAUCGUGCUGCCCAAAUGAUCCGCCUA-AAACCACACACGUCGUGUGAUUCCA (((((((((......)))((.....))....)))))).(((...((((((.........)))))).)))..-....(((((.....)))))...... ( -27.10, z-score = -1.52, R) >consensus AUCGGAGGAGACAAAUCCGCUGUUUGCAUAAUCCGAUUGGCUUCGAUCGUGCUGCCCAAAUGAUCCGCCCA_AAACCACACACGGCGUGUGGUUCAA (((((((((......)))((.....))....)))))).(((...((((((.........)))))).)))....((((((((.....))))))))... (-30.17 = -30.43 + 0.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:37:31 2011