| Sequence ID | dm3.chrX |
|---|---|
| Location | 12,397,284 – 12,397,375 |
| Length | 91 |
| Max. P | 0.954812 |
| Location | 12,397,284 – 12,397,375 |
|---|---|
| Length | 91 |
| Sequences | 5 |
| Columns | 107 |
| Reading direction | forward |
| Mean pairwise identity | 89.66 |
| Shannon entropy | 0.16449 |
| G+C content | 0.46918 |
| Mean single sequence MFE | -20.18 |
| Consensus MFE | -17.28 |
| Energy contribution | -17.48 |
| Covariance contribution | 0.20 |
| Combinations/Pair | 1.00 |
| Mean z-score | -2.28 |
| Structure conservation index | 0.86 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.61 |
| SVM RNA-class probability | 0.954812 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 12397284 91 + 22422827 UCGACUUCCCAGGCAUUUUACUCAUAACUGACGCUCCCAUGCCAAACC---------------GAAAAGAAACAAAACACUUUCCUUUUCCCCCCAUUGUCUGGGG- .......((((((((.................((......))......---------------(((((((((........))).)))))).......)))))))).- ( -18.40, z-score = -2.36, R) >droEre2.scaffold_4690 4287116 89 - 18748788 UCGACUUCCCAGGCAUUUUACUCAUAACUGGCGCUCCCAUGCCAAACC---------------AAAAAGAAACAAAACACUUUCCAUUGCCCC--AUUGUCUGGGU- .......((((((((.............(((((......)))))....---------------.....((((........)))).........--..)))))))).- ( -18.40, z-score = -1.58, R) >droYak2.chrX 6673213 105 + 21770863 UCGACUUCCCAGGCAUUUUACUCAUAACUGGCGCUCCCAUGCCAAACCGAAAAACCGAAAACCAAAAAGAAACAAAACACUUUCCUUUGCCCC--AUUGUCUGGGUG .......((((((((.............(((((......)))))..................((((..((((........)))).))))....--..)))))))).. ( -18.90, z-score = -1.15, R) >droSec1.super_21 153656 90 + 1102487 UCGACUUCCCAGGCAUUUUACUCAUAACUGGCGCUCCCAUGCCAAACC---------------GAAAAGAAACAAAACACUUUCCUUUUCCCCC-AUUGUCUGGGG- .......((((((((.............(((((......)))))....---------------(((((((((........))).))))))....-..)))))))).- ( -22.60, z-score = -3.15, R) >droSim1.chrX_random 3372566 90 + 5698898 UCGACUUCCCAGGCAUUUUACUCAUAACUGGCGCUCCCAUGCCAAACC---------------GAAAAGAAACAAAACACUUUCCUUUUCCCCC-AUUGUCUGGGG- .......((((((((.............(((((......)))))....---------------(((((((((........))).))))))....-..)))))))).- ( -22.60, z-score = -3.15, R) >consensus UCGACUUCCCAGGCAUUUUACUCAUAACUGGCGCUCCCAUGCCAAACC_______________GAAAAGAAACAAAACACUUUCCUUUUCCCCC_AUUGUCUGGGG_ .......((((((((.............(((((......)))))........................((((........)))).............)))))))).. (-17.28 = -17.48 + 0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:37:30 2011