| Sequence ID | dm3.chrX |
|---|---|
| Location | 12,390,692 – 12,390,783 |
| Length | 91 |
| Max. P | 0.775102 |
| Location | 12,390,692 – 12,390,783 |
|---|---|
| Length | 91 |
| Sequences | 6 |
| Columns | 94 |
| Reading direction | reverse |
| Mean pairwise identity | 71.65 |
| Shannon entropy | 0.52347 |
| G+C content | 0.37215 |
| Mean single sequence MFE | -18.75 |
| Consensus MFE | -8.36 |
| Energy contribution | -9.95 |
| Covariance contribution | 1.59 |
| Combinations/Pair | 1.24 |
| Mean z-score | -1.69 |
| Structure conservation index | 0.45 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.65 |
| SVM RNA-class probability | 0.775102 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 12390692 91 - 22422827 UGGUUGUCACGGCAACAAUAGUUGGUUUUCGGUAUAUAAUCGAUUG--GUUACCUGGGCAACGGUAAUUCAAAAACCAUAAAC-AAAACAUAAC ..(((((....)))))......(((((((((((.....)))))(((--((((((..(....)))))).)))))))))).....-.......... ( -20.30, z-score = -1.67, R) >droSim1.chrX 9522792 91 - 17042790 UGGUUGUCACGGCAACAAUAGUUGGUUUUCGGUAUAUAAUCGAUUG--GUUGCCUGGGCAACGGUAUUUCAAAAACCAUAAAC-AAAACAAAAC ..((((((..((((((..(((((((((..........)))))))))--))))))..))))))(((.........)))......-.......... ( -23.60, z-score = -2.46, R) >droSec1.super_21 147336 89 - 1102487 UGGUUGUCACGGCAACAAUAGUUGGUUUUCGGUAUAUAAUCGAUUG--GUUGCCUGGGCAACGGUAUUUCAAAAA-CAUAAAC-AAAACAAAA- ..((((((..((((((..(((((((((..........)))))))))--))))))..)))))).............-.......-.........- ( -22.00, z-score = -2.43, R) >droYak2.chrX 6666067 92 - 21770863 UAGUUGUCACGGCAACAUUGAAUGGUUUUUAGUAUAUAAUUGAUUG--GUUGUCUGGGCAACGGUAUUUCAAAAACCAUAAACAAAAACAUAAC ..(((((....))))).....(((((((((...((((..(((.(..--(....)..).)))..))))...)))))))))............... ( -19.40, z-score = -1.61, R) >droEre2.scaffold_4690 4280417 72 + 18748788 --------------ACAAAAGAUAGUUUUUGGUAUAUAAUCGAUUG--GUUGCCUGGGCAACGGUAUUUCAAAAACCACAAGC-AAAAC----- --------------..........((((.((((.............--(((((....)))))((....))....)))).))))-.....----- ( -14.30, z-score = -1.26, R) >droAna3.scaffold_12929 666024 72 + 3277472 -------------------AGACUCUUACAACCAC-CACUAGUUUGGCGUUGCCAUGGUAACGGCUUUUCAAAAAACG-AAAC-AAAACAAGCU -------------------................-....((((((.((((((....))))))...((((.......)-))).-....)))))) ( -12.90, z-score = -0.73, R) >consensus UGGUUGUCACGGCAACAAUAGAUGGUUUUCGGUAUAUAAUCGAUUG__GUUGCCUGGGCAACGGUAUUUCAAAAACCAUAAAC_AAAACAAAAC ..(((((....)))))......(((((((((((.....))))).....(((((....)))))..........))))))................ ( -8.36 = -9.95 + 1.59)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:37:28 2011