| Sequence ID | dm3.chrX |
|---|---|
| Location | 12,367,064 – 12,367,119 |
| Length | 55 |
| Max. P | 0.998794 |
| Location | 12,367,064 – 12,367,119 |
|---|---|
| Length | 55 |
| Sequences | 4 |
| Columns | 55 |
| Reading direction | forward |
| Mean pairwise identity | 94.83 |
| Shannon entropy | 0.08062 |
| G+C content | 0.27534 |
| Mean single sequence MFE | -10.58 |
| Consensus MFE | -10.35 |
| Energy contribution | -10.35 |
| Covariance contribution | -0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -4.01 |
| Structure conservation index | 0.98 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 3.49 |
| SVM RNA-class probability | 0.998794 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 12367064 55 + 22422827 AAAAAAAAAAUAGGCUAAAAUGUAGCCAAAUGUCUCAUGACAACAUAAACAUAUG ............(((((.....)))))...((((....))))............. ( -10.40, z-score = -3.88, R) >droSec1.super_21 124807 55 + 1102487 AAAAAAAAAAUAGGCUAAAAUAUAGCCAAAUGUCUCAUGACAACAUAAACAUAUG ............(((((.....)))))...((((....))))............. ( -10.40, z-score = -4.76, R) >droYak2.chrX 6642015 54 + 21770863 -AAAAAAAAAUAGGCUAAAUUGUAGCCAAAUGUCUCAUGACAACAUAAACAUAUG -...........(((((.....)))))...((((....))))............. ( -10.40, z-score = -3.49, R) >droEre2.scaffold_4690 4258826 54 - 18748788 -AAAAAAAAAUGGGCUAAAAUAUAGCCAAAUGUCUCGUGACAACAUAAACAUAUG -........((((((((.....)))))...((((....)))).)))......... ( -11.10, z-score = -3.91, R) >consensus _AAAAAAAAAUAGGCUAAAAUAUAGCCAAAUGUCUCAUGACAACAUAAACAUAUG ............(((((.....)))))...((((....))))............. (-10.35 = -10.35 + -0.00)
| Location | 12,367,064 – 12,367,119 |
|---|---|
| Length | 55 |
| Sequences | 4 |
| Columns | 55 |
| Reading direction | reverse |
| Mean pairwise identity | 94.83 |
| Shannon entropy | 0.08062 |
| G+C content | 0.27534 |
| Mean single sequence MFE | -9.90 |
| Consensus MFE | -9.75 |
| Energy contribution | -9.75 |
| Covariance contribution | 0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -2.29 |
| Structure conservation index | 0.98 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 2.23 |
| SVM RNA-class probability | 0.986109 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 12367064 55 - 22422827 CAUAUGUUUAUGUUGUCAUGAGACAUUUGGCUACAUUUUAGCCUAUUUUUUUUUU ...(((((((((....))).))))))..(((((.....)))))............ ( -9.60, z-score = -2.11, R) >droSec1.super_21 124807 55 - 1102487 CAUAUGUUUAUGUUGUCAUGAGACAUUUGGCUAUAUUUUAGCCUAUUUUUUUUUU ...(((((((((....))).))))))..(((((.....)))))............ ( -10.50, z-score = -2.66, R) >droYak2.chrX 6642015 54 - 21770863 CAUAUGUUUAUGUUGUCAUGAGACAUUUGGCUACAAUUUAGCCUAUUUUUUUUU- ...(((((((((....))).))))))..(((((.....)))))...........- ( -9.60, z-score = -1.85, R) >droEre2.scaffold_4690 4258826 54 + 18748788 CAUAUGUUUAUGUUGUCACGAGACAUUUGGCUAUAUUUUAGCCCAUUUUUUUUU- ((((....)))).((((....))))...(((((.....)))))...........- ( -9.90, z-score = -2.55, R) >consensus CAUAUGUUUAUGUUGUCAUGAGACAUUUGGCUACAUUUUAGCCUAUUUUUUUUU_ ((((....)))).((((....))))...(((((.....)))))............ ( -9.75 = -9.75 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:37:26 2011