| Sequence ID | dm3.chrX |
|---|---|
| Location | 12,362,785 – 12,362,847 |
| Length | 62 |
| Max. P | 0.878442 |
| Location | 12,362,785 – 12,362,847 |
|---|---|
| Length | 62 |
| Sequences | 5 |
| Columns | 66 |
| Reading direction | reverse |
| Mean pairwise identity | 93.93 |
| Shannon entropy | 0.10607 |
| G+C content | 0.28518 |
| Mean single sequence MFE | -11.12 |
| Consensus MFE | -10.72 |
| Energy contribution | -10.92 |
| Covariance contribution | 0.20 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.50 |
| Structure conservation index | 0.96 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.03 |
| SVM RNA-class probability | 0.878442 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 12362785 62 - 22422827 ----AUUUUUGCAGGGCUUACAAUUGUUUUAUAUCACAACAAUUUAAACCAAUUUGUUUUGCAAGU ----...((((((((((....(((((.((((.............)))).))))).)))))))))). ( -11.52, z-score = -1.70, R) >droSim1.chrX 9495640 62 - 17042790 ----GUUUUUGCAGGGCUUCCAAUUGUUUUAUAUCACAACAAUUUAAACCAAUUUGUUUUGCAAGU ----...((((((((((....(((((.((((.............)))).))))).)))))))))). ( -11.52, z-score = -1.54, R) >droSec1.super_21 120630 62 - 1102487 ----GUUUUUGCAGGGCUUCCAAUUGUUUUAUAUCACAACAAUUUAAACCAAUUUGUUUUGCAAGU ----...((((((((((....(((((.((((.............)))).))))).)))))))))). ( -11.52, z-score = -1.54, R) >droYak2.chrX 6637770 64 - 21770863 --CUUUUUUAGCAGGGCUUACAAUUGUUUUAUAUCACAACAAUUUAAACCAAUUUGUUUUGCAAGU --........(((((((....(((((.((((.............)))).))))).))))))).... ( -9.52, z-score = -0.98, R) >droEre2.scaffold_4690 4254487 66 + 18748788 UAUUUUUUUUGCAGGGCUUACAAUUGUUUUAUAUCACAACAAUUUAAACCAAUUUGUUUUGCAAGU .......((((((((((....(((((.((((.............)))).))))).)))))))))). ( -11.52, z-score = -1.73, R) >consensus ____GUUUUUGCAGGGCUUACAAUUGUUUUAUAUCACAACAAUUUAAACCAAUUUGUUUUGCAAGU .......((((((((((....(((((.((((.............)))).))))).)))))))))). (-10.72 = -10.92 + 0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:37:25 2011