| Sequence ID | dm3.chrX |
|---|---|
| Location | 12,360,331 – 12,360,427 |
| Length | 96 |
| Max. P | 0.700231 |
| Location | 12,360,331 – 12,360,427 |
|---|---|
| Length | 96 |
| Sequences | 5 |
| Columns | 102 |
| Reading direction | forward |
| Mean pairwise identity | 58.67 |
| Shannon entropy | 0.72833 |
| G+C content | 0.49412 |
| Mean single sequence MFE | -11.93 |
| Consensus MFE | -4.82 |
| Energy contribution | -5.66 |
| Covariance contribution | 0.84 |
| Combinations/Pair | 1.38 |
| Mean z-score | -0.98 |
| Structure conservation index | 0.40 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.45 |
| SVM RNA-class probability | 0.700231 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 12360331 96 + 22422827 -----ACCAACAACACCAACACCAUACGUAUGUACAUCGCCAU-CAACCCAAAUAGCAAGCGAUGAACUUUGUGCUCAUCGCACCCAACCCCAAAACUAAAG -----..........................((.((((((...-...............)))))).))...((((.....)))).................. ( -11.87, z-score = -2.17, R) >droSim1.chrX 9493197 92 + 17042790 ---------ACCGCAUCGCCACCAUACGUAUGUACAGCGCCAU-CAACCCAAAUAGCAAGCGAUGAACUUUGUGCUCAUCGCACCCAACCCCAAAACUAAAG ---------...((((((........)).))))...((.....-...........))..(((((((.(.....).))))))).................... ( -14.19, z-score = -1.61, R) >droSec1.super_21 118235 92 + 1102487 ---------ACCGCAUCACCACCAUACGUAUGUACAGCGCCAU-CAACCCAAAUAUCAAGCGAUGAACUUUGUGCUCAUCGCACCCAACCCCAAAACUAAAG ---------...((((.((........))))))..........-...............(((((((.(.....).))))))).................... ( -12.20, z-score = -1.92, R) >dp4.chrXL_group1a 3100672 86 + 9151740 CCCCUCCUUAGCGGCCCUUUUUCCCAUGCAAAAGAGCUGCCUUUUCACCCAGAAAGCAUGCAAUGAACUCUGUG-CCACUCCACCCC--------------- ..........(((((.(((((........))))).))))).........((((...(((...)))...))))..-............--------------- ( -13.20, z-score = -0.20, R) >droVir3.scaffold_12928 889399 80 + 7717345 ---------------------CUAAAU-CAGACACGCCCCCUUUCAGCCCAAAUAGCAUGCAAUGAACUCUGUGGCUGCCUCUCAACACAGCAAACACAAAC ---------------------.....(-((..((.((..................)).))...)))....((((..(((...........)))..))))... ( -8.17, z-score = 1.01, R) >consensus _________ACCGCACCACCACCAUACGUAUGUACACCGCCAU_CAACCCAAAUAGCAAGCGAUGAACUUUGUGCUCAUCGCACCCAACCCCAAAACUAAAG ...........................................................(((((((.(.....).))))))).................... ( -4.82 = -5.66 + 0.84)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:37:22 2011