| Sequence ID | dm3.chrX |
|---|---|
| Location | 12,345,097 – 12,345,191 |
| Length | 94 |
| Max. P | 0.726228 |
| Location | 12,345,097 – 12,345,191 |
|---|---|
| Length | 94 |
| Sequences | 14 |
| Columns | 111 |
| Reading direction | reverse |
| Mean pairwise identity | 82.62 |
| Shannon entropy | 0.37795 |
| G+C content | 0.38647 |
| Mean single sequence MFE | -23.94 |
| Consensus MFE | -15.60 |
| Energy contribution | -15.26 |
| Covariance contribution | -0.33 |
| Combinations/Pair | 1.62 |
| Mean z-score | -1.56 |
| Structure conservation index | 0.65 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.52 |
| SVM RNA-class probability | 0.726228 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 12345097 94 - 22422827 GAAUAAUUCUUAAAUCUAGGUAUUACUGUUGCUGGCGCAGUGAAACGUCCGGAUUUUUGGAAUUGUGAAUAUGUAU----AUGAUGUUUCUG-UGCGAU------------ ..((((((((.(((((((.((.(((((((.(....)))))))).)).)..))))))..)))))))).....(((((----(.((....))))-))))..------------ ( -22.40, z-score = -1.77, R) >droSim1.chrX 9477910 94 - 17042790 GAAUAAUUCUUAAAUCUAGGUAUUACUGUUGCUGGCGCAGUGAAACGUCCGGAUUUUUGGAAUUGUGAAUAUGUAU----AUGAUGUUUCUG-UGCGAU------------ ..((((((((.(((((((.((.(((((((.(....)))))))).)).)..))))))..)))))))).....(((((----(.((....))))-))))..------------ ( -22.40, z-score = -1.77, R) >droSec1.super_21 103022 94 - 1102487 GAAUAAUUCUUAAAUCUAGGUAUUACUGUUGCUGGCGCAGUGAAACGUCCGGAUUUUUGGAAUUGUGAAUAUGUAU----AUGAUGUUUCUG-UGCGAU------------ ..((((((((.(((((((.((.(((((((.(....)))))))).)).)..))))))..)))))))).....(((((----(.((....))))-))))..------------ ( -22.40, z-score = -1.77, R) >droYak2.chrX 6621083 94 - 21770863 GAAUAAUUCUUAAAUCUAGGUAUUACUGUUGCUGGCGCAGUGAAACGUCCGGAUUUUUGGAAUUGUGAAUAUGUAU----AUGAUGUUUCUG-UGCGAU------------ ..((((((((.(((((((.((.(((((((.(....)))))))).)).)..))))))..)))))))).....(((((----(.((....))))-))))..------------ ( -22.40, z-score = -1.77, R) >droEre2.scaffold_4690 4236053 94 + 18748788 GAAUAAUUCUUAAAUCUAGGUAUUACUGUUGCUGGCGCAGUGAAACGUCCGGAUUUUUGGAAUUGUGAAUAUGUAU----AUGAUGUUUCUG-UGCGAU------------ ..((((((((.(((((((.((.(((((((.(....)))))))).)).)..))))))..)))))))).....(((((----(.((....))))-))))..------------ ( -22.40, z-score = -1.77, R) >droAna3.scaffold_13335 2329653 94 + 3335858 GAAUAAUUCUUAAAUCUAGGUAUUACUGUGGCUGGCGCAGUGAAACGUCCGGAUUUUUGGAAUUGUGAAUAUGUAU----AUGAUGUUUCUG-UGCAAG------------ ..((((((((.(((((((.((.((((((((.....)))))))).)).)..))))))..)))))))).....(((((----(.((....))))-))))..------------ ( -25.90, z-score = -2.93, R) >dp4.chrXL_group1a 3082269 94 - 9151740 GAAUAAUUCUUAAAUCUAGGUAUUACUGUUGCUGGCGCAGUGAAACGUCCGGAUUUUUGGAAUUGUGAAUAUGUAU----AUGAUGUUUCUG-UGCGAU------------ ..((((((((.(((((((.((.(((((((.(....)))))))).)).)..))))))..)))))))).....(((((----(.((....))))-))))..------------ ( -22.40, z-score = -1.77, R) >droPer1.super_12 2217027 94 + 2414086 GAAUAAUUCUUAAAUCUAGGUAUUACUGUUGCUGGCGCAGUGAAACGUCCGGAUUUUUGGAAUUGUGAAUAUGUAU----AUGAUGUUUCUG-UGCGAU------------ ..((((((((.(((((((.((.(((((((.(....)))))))).)).)..))))))..)))))))).....(((((----(.((....))))-))))..------------ ( -22.40, z-score = -1.77, R) >droWil1.scaffold_180777 4103906 94 - 4753960 GAAUAAUUCUUAAAUCUAGGUAUUACUGUUGCUGGCGCAGUGAAACGUCCGGAUUUUUGGAAUUGUGAAUAUGUAU----AUGAUGUUUCUG-AGUGAG------------ ..((((((((.(((((((.((.(((((((.(....)))))))).)).)..))))))..))))))))((((((....----...))))))...-......------------ ( -18.60, z-score = -0.56, R) >droVir3.scaffold_12928 3975200 94 - 7717345 GAAUAAUUCUUAAAUCUAGGUAUUACUGUGGCUGGCGCGGUGAAACGUCCAGAUUUUUGGAAUUGUGAAUAUGUAU----AAGAUGUUUCUG-UACGAU------------ ..((((((((.((((((.((..((((((((.....)))))))).....))))))))..)))))))).....(((((----(.((....))))-))))..------------ ( -24.70, z-score = -2.62, R) >droMoj3.scaffold_6359 565952 96 - 4525533 GAAUAGUUCUUAAAUCUAGGUAUUACUGUUGCUGGCGCAGUGAAACGUCCGGAUUUUUGGAAUUGUGAAUAUGUAU----AUGAUGUUUCUG-UACGACAU---------- ..((((((((.(((((((.((.(((((((.(....)))))))).)).)..))))))..)))))))).....(((((----(.((....))))-))))....---------- ( -22.40, z-score = -1.29, R) >droGri2.scaffold_15081 509120 95 + 4274704 GAAUAGUUCUUAAAUCUAGGUAUUACUGUUGCUGGCGCAGUGAAACGUCCGGAUUUUUGGAAUUGUGAAUAUGUAU----AUGAAGUUUCUG-UGUAUGU----------- ..((((((((.(((((((.((.(((((((.(....)))))))).)).)..))))))..))))))))....((((((----((((....)).)-)))))))----------- ( -20.30, z-score = -1.15, R) >triCas2.ChLG9 11030630 111 + 15222296 CCGUAUUUUCUAAAUCGUGGAAUUGUCGUAGCUGGUGGUGUUAUUCUGCCACUUUUCUGGAAGCUGGCAAAAGUGCUGGAGUGGGAAUACUCUUCCAAGACUUCGUUUGAG ..((((((((((.....)))).(((((..((((((((((........))))))........))))))))))))))).(((((.((((.....))))...)))))....... ( -25.20, z-score = 0.57, R) >anoGam1.chrX 14695913 100 + 22145176 UUGUACUUCCGGAAGCGCGGUAUCACGGUGGCGGGUGCGGUCAGCUUGCCCGUCUUCUGGAACUGGGCGUACGUGU----AGGACGUCUCUGUUGUGGGACGUC------- ......((((((((((((.(.....).)))((((((((.....))..)))))))))))))))(((.((....)).)----))((((((((......))))))))------- ( -41.30, z-score = -1.51, R) >consensus GAAUAAUUCUUAAAUCUAGGUAUUACUGUUGCUGGCGCAGUGAAACGUCCGGAUUUUUGGAAUUGUGAAUAUGUAU____AUGAUGUUUCUG_UGCGAU____________ ..((((((((.(((((((.((.(((((((.......))))))).)).)..))))))..))))))))............................................. (-15.60 = -15.26 + -0.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:37:21 2011