| Sequence ID | dm3.chrX |
|---|---|
| Location | 12,324,586 – 12,324,700 |
| Length | 114 |
| Max. P | 0.966787 |
| Location | 12,324,586 – 12,324,700 |
|---|---|
| Length | 114 |
| Sequences | 8 |
| Columns | 118 |
| Reading direction | forward |
| Mean pairwise identity | 85.34 |
| Shannon entropy | 0.30521 |
| G+C content | 0.43660 |
| Mean single sequence MFE | -33.85 |
| Consensus MFE | -22.94 |
| Energy contribution | -23.69 |
| Covariance contribution | 0.75 |
| Combinations/Pair | 1.00 |
| Mean z-score | -2.50 |
| Structure conservation index | 0.68 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.77 |
| SVM RNA-class probability | 0.966787 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 12324586 114 + 22422827 -AUAUGGUCAAGCAUUUUCAUUAUUGUCUGGCCAACU-CUGAUUUAUGCCAUUCAAUUCGCUUUCGGCAGACAAACCGCCGGAAAAUGAAGCCCAUGAAUCAGU-AGUGUGGCCAAU- -...........................(((((((((-((((((((((...((((......(((((((.........)))))))..))))...)))))))))).-))).))))))..- ( -34.70, z-score = -2.68, R) >droPer1.super_12 2195079 113 - 2414086 AUAUGGCCAAGGCAUUUUCAUUAUUGUCUGG-CCAA--CUGAUUUAUGCCAUUCAAUUCGCUUUCAGCAGACAAACCGCCGGAAAAUGAAACCCAUGAAUCAGU-AGUGUGGCCAAU- ...((((((.(((.....((....))....)-)).(--((((((((((...((((....((.....)).......((...))....))))...)))))))))))-....))))))..- ( -32.00, z-score = -2.05, R) >dp4.chrXL_group1a 3059989 113 + 9151740 AUAUGGCCAAGGCAUUUUCAUUAUUGUCUGG-CCAA--CUGAUUUAUGCCAUUCAAUUCGCUUUCAGCAGACAAACCGCCGGAAAAUGAAACCCAUGAAUCAGU-AGUGUGGCCAAU- ...((((((.(((.....((....))....)-)).(--((((((((((...((((....((.....)).......((...))....))))...)))))))))))-....))))))..- ( -32.00, z-score = -2.05, R) >droAna3.scaffold_13335 2308663 118 - 3335858 AUAUGGGCUCGACAUUUUCAUUAUUGUCUGGCCCAGAACUGAUUUAUGUCAUUCAAUACGCUUUCGGCAGACAAACCGCCGGAAAAUGAAGCCCAUGAAUCAAUCGGCCAGGCCAAUA ...((((((.((((..........)))).))))))((..(((((((((...((((......(((((((.........)))))))..))))...))))))))).))(((...))).... ( -36.60, z-score = -2.69, R) >droEre2.scaffold_4690 4217021 112 - 18748788 -AUAUGGGCAAGCAUUUUCAUUAUUGUCUGG-CCAA--CUGAUUUAUGCCAUUCAAUUCGCUUUCGGCAGACAAACCGCCGGAAAAUGAAGCCCAUGAAUCAGU-AGUAAGGCCAAU- -....((((((............))))))((-((.(--((((((((((...((((......(((((((.........)))))))..))))...)))))))))))-.....))))...- ( -33.20, z-score = -2.27, R) >droYak2.chrX 6602222 112 + 21770863 -AUAUGGGCAAGCAUUUUCAUUAUUGUCUGG-CCAA--CUGAUUUAUGCCAUUCAAUUCGCUUUCGGCAGACAAACCGCCGGAAAAUGAAGCCCAUGAAUCAGU-AGUGUGGCCAAU- -....((((((............))))))((-((((--((((((((((...((((......(((((((.........)))))))..))))...)))))))))))-....)))))...- ( -35.40, z-score = -2.38, R) >droSec1.super_21 83709 89 + 1102487 -------------------------AUAUGGGCCAA--CUGAUUUAUGCCAUUCAAUUCGCUUUCGGCACACAAACCGCCGGAAAAUGAAGCCCAUGAAUCAGU-AGUGUGGCCAAU- -------------------------.....((((((--((((((((((...((((......(((((((.........)))))))..))))...)))))))))))-....)))))...- ( -31.50, z-score = -3.51, R) >droSim1.chrX_random 259375 112 + 5698898 -AUAUGGGCAAGCAUUUUCAUUAUUGUCUGG-CCAA--CUGAUUUAUGCCAUUCAAUUCGCUUUCGGCAGACAAACCGCCGGAAAAUGAAGCCCAUGAAUCAGU-AGUGUGGCCAAU- -....((((((............))))))((-((((--((((((((((...((((......(((((((.........)))))))..))))...)))))))))))-....)))))...- ( -35.40, z-score = -2.38, R) >consensus _AUAUGGCCAAGCAUUUUCAUUAUUGUCUGG_CCAA__CUGAUUUAUGCCAUUCAAUUCGCUUUCGGCAGACAAACCGCCGGAAAAUGAAGCCCAUGAAUCAGU_AGUGUGGCCAAU_ ............................(((.(((...((((((((((...((((......(((((((.........)))))))..))))...))))))))))......))))))... (-22.94 = -23.69 + 0.75)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:37:20 2011