| Sequence ID | dm3.chrX |
|---|---|
| Location | 12,314,301 – 12,314,417 |
| Length | 116 |
| Max. P | 0.801014 |
| Location | 12,314,301 – 12,314,417 |
|---|---|
| Length | 116 |
| Sequences | 4 |
| Columns | 116 |
| Reading direction | reverse |
| Mean pairwise identity | 79.77 |
| Shannon entropy | 0.33156 |
| G+C content | 0.27722 |
| Mean single sequence MFE | -23.65 |
| Consensus MFE | -11.93 |
| Energy contribution | -13.05 |
| Covariance contribution | 1.12 |
| Combinations/Pair | 1.12 |
| Mean z-score | -2.47 |
| Structure conservation index | 0.50 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.73 |
| SVM RNA-class probability | 0.801014 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 12314301 116 - 22422827 GCAGUUGAACUCAAACUGAAUAAAAGAAAGUGUAGUUAGUGUAGUUCUUAAUUAUACAUAAUUGCUUUAUGUGGAAUAAUAUUUCAUUGAAUUAUUUCUCACUCUGCAUAUUUCAC .(((((.......))))).......((((((((((..((((.((....(((((.(((((((.....)))))))(((......)))....)))))...)))))))))))).)))).. ( -23.50, z-score = -1.62, R) >droEre2.scaffold_4690 4206566 98 + 18748788 -------------AGCUGAAUGAAAUA--CUGUAGCUA---UAUUCCUUAAUCAGACAUAAUUGCCUUAUGUAUAAUAAUAUUUAAUUGAAUUAUUUCUUCCUCUGCACAUUGUAC -------------.((.((..((((((--(((.((...---.....))....)))((((((.....))))))....................))))))....)).))......... ( -9.80, z-score = 0.78, R) >droSec1.super_21 73622 113 - 1102487 GCAGGUGAACACAAAGUGAAUAAGAGAGUGUGUAGUUA---CAUUCCUUAAUUAUACAUAAUUGCUUUAUGUAUAAUUAUAUUUUAUUGAAUUAUUUCUCACUCUGCAUAUUUCAC ((((((((........(.((((((((((((((....))---)))))..(((((((((((((.....)))))))))))))..))))))).)........)))).))))......... ( -32.19, z-score = -4.84, R) >droSim1.chrX_random 249297 113 - 5698898 GCAGGUGAACCCGAAGUGAAUAAAAGAGAGUGUAGUUA---CAUUCCUUAAUUAUACAUAAUUGCUUUAUGUAUAAUUAUAUUUUAUUGAAUUAUUUCUCAGUCUGCAUAUUUCAC ((((((((....(((((((....(((.((((((....)---))))))))((((((((((((.....)))))))))))).............)))))))))).)))))......... ( -29.10, z-score = -4.20, R) >consensus GCAGGUGAAC_CAAACUGAAUAAAAGAGAGUGUAGUUA___CAUUCCUUAAUUAUACAUAAUUGCUUUAUGUAUAAUAAUAUUUUAUUGAAUUAUUUCUCACUCUGCAUAUUUCAC .........................(((.((((((.............(((((((((((((.....))))))))))))).........(((....))).....)))))).)))... (-11.93 = -13.05 + 1.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:37:14 2011