| Sequence ID | dm3.chrX |
|---|---|
| Location | 12,309,028 – 12,309,124 |
| Length | 96 |
| Max. P | 0.980897 |
| Location | 12,309,028 – 12,309,124 |
|---|---|
| Length | 96 |
| Sequences | 5 |
| Columns | 114 |
| Reading direction | reverse |
| Mean pairwise identity | 77.44 |
| Shannon entropy | 0.39078 |
| G+C content | 0.52839 |
| Mean single sequence MFE | -27.30 |
| Consensus MFE | -20.00 |
| Energy contribution | -20.68 |
| Covariance contribution | 0.68 |
| Combinations/Pair | 1.11 |
| Mean z-score | -2.12 |
| Structure conservation index | 0.73 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 2.06 |
| SVM RNA-class probability | 0.980897 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 12309028 96 - 22422827 CCGGCAUAAUCAUAAUAG----------CUUUUCCCCCCAUCACCCAUUUCCCC------CCAUGGACUUUUCCGACCGUCGGAAAAGUCUGUCUGGUGCGAUAAGCAGCGA-- ...((.............----------........................((------..(((((((((((((.....)))))))))))))..))(((.....)))))..-- ( -24.30, z-score = -1.95, R) >droEre2.scaffold_4690 4201221 103 + 18748788 CCGGCAUAAUCAUAAUAG-----------GUUUUUCCUCCUCCCCUGCUCCCCCGCUCCCCCGCCGACUUUUCCGACCGUCGGAAAUGUCUGUCUGGUGCGAUAAGCAGCGAGC ..((...((((......)-----------)))...))..(((..(((((....(((.((...((.(((.((((((.....)))))).))).))..)).)))...))))).))). ( -30.10, z-score = -2.37, R) >droYak2.chrX 6583010 113 - 21770863 CCGGCAUAAUCAUAAUUUUCCCUACCCCCUUUUUCCCCUUUUUCCCAUUUUCCCUAUGGACUGCGGACUUUUCCGACCGUCGGAAAAGUCUGUCUGGUGCGAUAAGCAGCGGA- ............................................((((.......))))...(((((((((((((.....)))))))))))))(((.(((.....))).))).- ( -30.40, z-score = -2.03, R) >droSec1.super_21 68387 93 - 1102487 CCGGCAUAAUCAUAAUAUCC------------UUUCCCCUUCCCCCAUUUCCCCCAU-------GGACUUUUCCGACCGUCGGAAAAGUCUGUCUGGUGCGAUAAGCAGGGA-- ..((.(((.......)))))------------...........(((.....((..((-------(((((((((((.....)))))))))))))..))(((.....)))))).-- ( -27.40, z-score = -2.16, R) >droSim1.chrX 9467999 93 - 17042790 CCGGCAUAAUCAUAAUAG----------CUUUUCCCCC--UCCCCCAUUU-CCC------CCAUGGACUUUUCCGACCGUCGGAAAAGUCUGUCUGGUGCGAUAAGCAGCGA-- ...((.............----------..........--..........-.((------..(((((((((((((.....)))))))))))))..))(((.....)))))..-- ( -24.30, z-score = -2.08, R) >consensus CCGGCAUAAUCAUAAUAG__________CUUUUUCCCCCUUCCCCCAUUUCCCC__U___CCACGGACUUUUCCGACCGUCGGAAAAGUCUGUCUGGUGCGAUAAGCAGCGA__ ..............................................................(((((((((((((.....))))))))))))).((.(((.....))).))... (-20.00 = -20.68 + 0.68)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:37:13 2011