| Sequence ID | dm3.chrX |
|---|---|
| Location | 12,306,485 – 12,306,562 |
| Length | 77 |
| Max. P | 0.695894 |
| Location | 12,306,485 – 12,306,562 |
|---|---|
| Length | 77 |
| Sequences | 5 |
| Columns | 78 |
| Reading direction | reverse |
| Mean pairwise identity | 91.53 |
| Shannon entropy | 0.15048 |
| G+C content | 0.48144 |
| Mean single sequence MFE | -22.46 |
| Consensus MFE | -17.08 |
| Energy contribution | -17.08 |
| Covariance contribution | 0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -2.11 |
| Structure conservation index | 0.76 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.44 |
| SVM RNA-class probability | 0.695894 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 12306485 77 - 22422827 GCUGUGCGUUCUGGCAUUUCCGCUAAAUGACAGUAUCAAUAUUGUCACUUGUAGCCACGAC-CAACGGCAACUUGGCG ((((((.(((.((((((((.....))))(((((((....))))))).......)))).)))-).)))))......... ( -20.70, z-score = -1.11, R) >droEre2.scaffold_4690 4198803 74 + 18748788 GCUGUGCGUUCUGGCAUUUCCGCUAAAUGACAGUAUCAAUAUUGUCACUUGUAGCCAC-AACCAAC-GCAC--UGGCG (((((((((..(((.......((((..((((((((....))))))))....))))...-..)))))-))))--.))). ( -25.30, z-score = -3.45, R) >droYak2.chrX 6580381 75 - 21770863 GCUGUGCGUUCUGGCAUUUCCGCUAUAUGACAGUAUCAAUAUUGUCACUUGUAGCCUC-AACCAACCGAAU--UGGCG (((((((......))))....((((((((((((((....))))))))..))))))...-............--.))). ( -19.20, z-score = -1.73, R) >droSec1.super_21 65977 76 - 1102487 GCUGUGCGUUCUGGCAUUUCCGCUAAAUGACAGUAUCAAUAUUGUCACUUGUAGCCACUAAGGAACGGAAC--UGGCG (((((.((((((((.....))((((..((((((((....))))))))....))))......))))))..))--.))). ( -22.60, z-score = -1.99, R) >droSim1.chrX 9465562 76 - 17042790 GCUGUGCGUUCUGGCAUUUCCGCUAAAUGACAGUAUCAAUAUUGUCACUUGUAGCCACGACGGAACGGAAA--UGGCG (((((.(((((((........((((..((((((((....))))))))....)))).....)))))))...)--)))). ( -24.52, z-score = -2.29, R) >consensus GCUGUGCGUUCUGGCAUUUCCGCUAAAUGACAGUAUCAAUAUUGUCACUUGUAGCCAC_AACCAACGGAAA__UGGCG (((((((......))))....((((..((((((((....))))))))....))))...................))). (-17.08 = -17.08 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:37:12 2011