Locus 14275

Sequence ID dm3.chrX
Location 12,305,563 – 12,305,619
Length 56
Max. P 0.810384
window19656

overview

Window 6

Location 12,305,563 – 12,305,619
Length 56
Sequences 5
Columns 56
Reading direction forward
Mean pairwise identity 88.39
Shannon entropy 0.20865
G+C content 0.47500
Mean single sequence MFE -13.04
Consensus MFE -11.80
Energy contribution -11.64
Covariance contribution -0.16
Combinations/Pair 1.08
Mean z-score -1.41
Structure conservation index 0.90
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 0.76
SVM RNA-class probability 0.810384
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chrX 12305563 56 + 22422827
AAACGAUGCAAUCCUCUCGUCCAACGGGACUGGUACCAUCGAAUUGAACACCAUUU
...(((((....(((((((.....)))))..))...)))))............... ( -12.30, z-score =  -1.25, R)
>droSim1.chrX 9464445 56 + 17042790
AAACGAUGCAAUCCUCUCGUCCAACGGGACUGGUACCAUCGAAUUGAAAAACAUUU
...(((((....(((((((.....)))))..))...)))))............... ( -12.30, z-score =  -1.58, R)
>droSec1.super_21 64874 56 + 1102487
AAACGAUGCAAUCCUCUCGUCCAACGGGACUGGUACCAUCGAAUUGAAAAACAUUU
...(((((....(((((((.....)))))..))...)))))............... ( -12.30, z-score =  -1.58, R)
>droYak2.chrX 1864704 56 + 21770863
AAGCGAUGCAAUCCUCUCGUCCAGCGGGACCGGUACCAUCGCUUUGAAUUCCCUUA
((((((((....(((((((.....)))))..))...))))))))............ ( -17.00, z-score =  -2.16, R)
>droEre2.scaffold_4690 14843074 56 + 18748788
AAACGAUGCAAUCCUCUCGUCCACUGGGACCGGUACCAUCGAUUUGAAUCCCCUUC
...(((((....((....((((....)))).))...)))))............... ( -11.30, z-score =  -0.46, R)
>consensus
AAACGAUGCAAUCCUCUCGUCCAACGGGACUGGUACCAUCGAAUUGAAAACCAUUU
...(((((....(((((((.....)))))..))...)))))............... (-11.80 = -11.64 +  -0.16)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:37:11 2011