Locus 14273

Sequence ID	dm3.chrX
Location	12,296,318 – 12,296,409
Length	91
Max. P	0.900027

overview

Window 2

Location	12,296,318 – 12,296,409
Length	91
Sequences	4
Columns	92
Reading direction	forward
Mean pairwise identity	78.44
Shannon entropy	0.35284
G+C content	0.60061
Mean single sequence MFE	-20.93
Consensus MFE	-13.48
Energy contribution	-15.23
Covariance contribution	1.75
Combinations/Pair	1.00
Mean z-score	-2.05
Structure conservation index	0.64
Background model	dinucleotide
Decision model	sequence based alignment quality
SVM decision value	1.15
SVM RNA-class probability	0.900027
Prediction	RNA

Download alignment: ClustalW | MAF

>dm3.chrX 12296318 91 + 22422827
CCCGGAUCCGGAUCCUCCAGUAACCCC-CUAUAGCACCCCAUACCCUCCGGUUGCCCCACAAACCAAUCCCAUCCAGAGCCAGACUGGAGAG
.(((....)))...(((((((......-.....................((((........))))..((.......)).....))))))).. ( -18.30, z-score =  -1.34, R)
>droSim1.chrX 9455437 92 + 17042790
CCCGGAUCCGGAUCCUCCAGUAACCCCGCUACAGCACACCACUCCCCCCGGUUGCCCCACAAACCAAUCCCAUCCAGAACCAGACUGGAGAG
.(((....)))...(((((((......((....))..............((((........))))..................))))))).. ( -21.70, z-score =  -2.64, R)
>droSec1.super_21 53066 92 + 1102487
CCCGGAUCCGGAUCCUCCAGUAACCCCGCUACAGCACACCACUCCCUCCGGUUGCCCCACAAACCAAUCCCAUCCAGAACCAGACUGGAGAG
.(((....)))...(((((((......((....))..............((((........))))..................))))))).. ( -21.70, z-score =  -2.38, R)
>droYak2.chrX 6571880 86 + 21770863
CCCGGAUCCGGAUACUCCACUG-CUCCACUGCUGCACAAC-----CCCAACACAAACCAAUACCCAUCCAGAUGCAUGGGCAGACUGGAGAG
.(((....)))...((((((((-(.(((.(((........-----............................))))))))))..))))).. ( -22.02, z-score =  -1.82, R)
>consensus
CCCGGAUCCGGAUCCUCCAGUAACCCCGCUACAGCACACCACUCCCCCCGGUUGCCCCACAAACCAAUCCCAUCCAGAACCAGACUGGAGAG
.(((....)))...(((((((......((....))..............((((........))))..................))))))).. (-13.48 = -15.23 +   1.75)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:37:08 2011