| Sequence ID | dm3.chrX |
|---|---|
| Location | 12,289,582 – 12,289,640 |
| Length | 58 |
| Max. P | 0.649177 |
| Location | 12,289,582 – 12,289,640 |
|---|---|
| Length | 58 |
| Sequences | 7 |
| Columns | 68 |
| Reading direction | forward |
| Mean pairwise identity | 69.55 |
| Shannon entropy | 0.57623 |
| G+C content | 0.50375 |
| Mean single sequence MFE | -12.30 |
| Consensus MFE | -4.66 |
| Energy contribution | -5.16 |
| Covariance contribution | 0.50 |
| Combinations/Pair | 1.55 |
| Mean z-score | -1.65 |
| Structure conservation index | 0.38 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.33 |
| SVM RNA-class probability | 0.649177 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 12289582 58 + 22422827 --------AUGCCAGCC--ACGCAUUCCAGCGAUUUAAUGACCCCAAAGUCGAGGCAACCAUUUUGCC --------.((((....--.(((......)))......((((......)))).))))........... ( -12.40, z-score = -1.97, R) >droSim1.chrX 9448269 56 + 17042790 --------AUGCCAGCC--ACGCAUUCCAGCGAUUUAAUGACCC-AAAGUCGAAGCAAC-AUUUUGCC --------.(((.....--.(((......)))......((((..-...))))..)))..-........ ( -8.00, z-score = -0.72, R) >droSec1.super_21 46483 58 + 1102487 --------AUGCCAGCC--ACGCAUUCCAGCGAUUUAAUGACCCCAAAGUCGAGGCAACCAUUUUGCC --------.((((....--.(((......)))......((((......)))).))))........... ( -12.40, z-score = -1.97, R) >droYak2.chrX 6565059 58 + 21770863 --------AUGCCAGCC--ACGCAUUCCAGCGCUUUAAUGACACCAAAGUCGAGGCAACCAUUUUGCC --------.((((....--.(((......)))......((((......)))).))))........... ( -12.20, z-score = -1.24, R) >droEre2.scaffold_4690 4183771 58 - 18748788 --------AUGCCAGCC--ACGCAUUCCAGCGAUUUAAUGACCCCACAGUCGAGGCAACCAUUUUGCC --------.((((....--.(((......)))......((((......)))).))))........... ( -12.40, z-score = -2.04, R) >droAna3.scaffold_13335 2269825 61 - 3335858 AUCCCUCCCCGGUAACCUUACACAUGCCCAGGAUUUAAUGAUCC------UGUGGCAACCGUUU-GCC ..........(((((....((...(((((((((((....)))))------)).))))...))))-))) ( -18.70, z-score = -3.48, R) >droWil1.scaffold_180777 4047032 60 + 4753960 ------AUGGCACACUCUGAUAGUCAGCAGUAAUUUAAUGACUA--AAAGCGAGUCCUUCCCUCUGAC ------..((.((.(.((..((((((..((....))..))))))--..)).).))))........... ( -10.00, z-score = -0.13, R) >consensus ________AUGCCAGCC__ACGCAUUCCAGCGAUUUAAUGACCCCAAAGUCGAGGCAACCAUUUUGCC .........((((.......(((......)))......((((......)))).))))........... ( -4.66 = -5.16 + 0.50)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:37:07 2011