| Sequence ID | dm3.chrX |
|---|---|
| Location | 12,281,774 – 12,281,833 |
| Length | 59 |
| Max. P | 0.542621 |
| Location | 12,281,774 – 12,281,833 |
|---|---|
| Length | 59 |
| Sequences | 4 |
| Columns | 59 |
| Reading direction | forward |
| Mean pairwise identity | 88.70 |
| Shannon entropy | 0.18195 |
| G+C content | 0.45339 |
| Mean single sequence MFE | -15.65 |
| Consensus MFE | -11.32 |
| Energy contribution | -11.95 |
| Covariance contribution | 0.63 |
| Combinations/Pair | 1.15 |
| Mean z-score | -1.95 |
| Structure conservation index | 0.72 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.04 |
| SVM RNA-class probability | 0.514322 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 12281774 59 + 22422827 UCGACAGGGGAGUUUUGCUGUAAUCAAUAUGCAAUUGUGUUGCCAUCUCUCUCUGUCUC ..((((((((((...((..(((((((((.....)))).))))))).))).))))))).. ( -17.70, z-score = -3.00, R) >droSim1.chrX 9441841 59 + 17042790 UCGACAGGGGAGUUUUGCUGUAAUCAAUAUGCAAUUGUGUUGCCAUCUCUCUCCGUCUC ..(((.((((((...((..(((((((((.....)))).)))))))...))))))))).. ( -16.60, z-score = -2.48, R) >droSec1.super_21 38844 59 + 1102487 UCGACAGGGGAGUUUUGCUGUAAUCAAUAUGCAAUUGUGUUGCCAUCUCUCUCCGUCUC ..(((.((((((...((..(((((((((.....)))).)))))))...))))))))).. ( -16.60, z-score = -2.48, R) >droAna3.scaffold_13335 2260285 59 - 3335858 UCGACAGGGGACUUUGGUUGUAAUCAAUAUGCGAUUGUGUCGGCAGUUCUCCUUCUCUU ..((.((((((.....((((....((((.....))))...))))...)))))))).... ( -11.70, z-score = 0.17, R) >consensus UCGACAGGGGAGUUUUGCUGUAAUCAAUAUGCAAUUGUGUUGCCAUCUCUCUCCGUCUC ..(((.((((((...((..(((((((((.....)))).)))))))...))))))))).. (-11.32 = -11.95 + 0.63)
| Location | 12,281,774 – 12,281,833 |
|---|---|
| Length | 59 |
| Sequences | 4 |
| Columns | 59 |
| Reading direction | reverse |
| Mean pairwise identity | 88.70 |
| Shannon entropy | 0.18195 |
| G+C content | 0.45339 |
| Mean single sequence MFE | -12.62 |
| Consensus MFE | -9.10 |
| Energy contribution | -9.60 |
| Covariance contribution | 0.50 |
| Combinations/Pair | 1.07 |
| Mean z-score | -1.98 |
| Structure conservation index | 0.72 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.10 |
| SVM RNA-class probability | 0.542621 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 12281774 59 - 22422827 GAGACAGAGAGAGAUGGCAACACAAUUGCAUAUUGAUUACAGCAAAACUCCCCUGUCGA ..(((((.(.(((.((....))...((((............))))..))).)))))).. ( -14.90, z-score = -3.26, R) >droSim1.chrX 9441841 59 - 17042790 GAGACGGAGAGAGAUGGCAACACAAUUGCAUAUUGAUUACAGCAAAACUCCCCUGUCGA ..(((((.(.(((.((....))...((((............))))..))).)))))).. ( -14.20, z-score = -2.40, R) >droSec1.super_21 38844 59 - 1102487 GAGACGGAGAGAGAUGGCAACACAAUUGCAUAUUGAUUACAGCAAAACUCCCCUGUCGA ..(((((.(.(((.((....))...((((............))))..))).)))))).. ( -14.20, z-score = -2.40, R) >droAna3.scaffold_13335 2260285 59 + 3335858 AAGAGAAGGAGAACUGCCGACACAAUCGCAUAUUGAUUACAACCAAAGUCCCCUGUCGA ..((..(((.(.(((........(((((.....)))))........))).)))).)).. ( -7.19, z-score = 0.15, R) >consensus GAGACAGAGAGAGAUGGCAACACAAUUGCAUAUUGAUUACAGCAAAACUCCCCUGUCGA ..(((((.(.(((.((....))((((.....))))............)))).))))).. ( -9.10 = -9.60 + 0.50)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:37:07 2011