| Sequence ID | dm3.chrX |
|---|---|
| Location | 12,274,943 – 12,275,008 |
| Length | 65 |
| Max. P | 0.655775 |
| Location | 12,274,943 – 12,275,008 |
|---|---|
| Length | 65 |
| Sequences | 5 |
| Columns | 76 |
| Reading direction | reverse |
| Mean pairwise identity | 77.95 |
| Shannon entropy | 0.35547 |
| G+C content | 0.38004 |
| Mean single sequence MFE | -16.25 |
| Consensus MFE | -8.77 |
| Energy contribution | -9.29 |
| Covariance contribution | 0.52 |
| Combinations/Pair | 1.24 |
| Mean z-score | -2.00 |
| Structure conservation index | 0.54 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.35 |
| SVM RNA-class probability | 0.655775 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 12274943 65 - 22422827 -------CCCAAAGUUGAGGUAAGUUUUCCUUACAUCUCGAUUGCUGUACAAUUUAUU----GCCAAUUGAAGGAU -------.((......((.(((((.....))))).))((((((((.(((.....))).----).))))))).)).. ( -11.80, z-score = -0.83, R) >droEre2.scaffold_4690 4173244 76 + 18748788 UCCAUUUUCCAAAGCUGAGGUGAGUUAGCCUUAGUUCUCAAUUGCUGUGCAGUUAAAUCCAAUCCAAUUGAGGGAU .......(((..(((((((((......)))))))))((((((((...((.(......).))...))))))))))). ( -21.90, z-score = -2.56, R) >droYak2.chrX 6554276 65 - 21770863 -------UCCAAAGUUGAACUGAGUUAGCCGCAUUUCUCAAUUGCUGCACAAUUUAUU----UGCAAUUGAAGGAU -------(((...(((((......)))))........((((((((.............----.)))))))).))). ( -12.84, z-score = -0.61, R) >droSec1.super_21 35925 65 - 1102487 -------CCCAAAGUUGAGGUAAGUUUUCCUUACUUCUCGAUUGCAGUACAAUUUAUU----GCCAAUUGAAGGAU -------.((......((((((((.....))))))))((((((((((((.....))))----).))))))).)).. ( -19.40, z-score = -3.97, R) >droSim1.chrX 9438883 65 - 17042790 -------CCGAAAGCUGAGGUAAGUUUUCCUUACUUCUCCAUUGCAGUACAAUUUAUU----GCCAAUUGAAGGAU -------((.......((((((((.....))))))))((.(((((((((.....))))----).)))).)).)).. ( -15.30, z-score = -2.03, R) >consensus _______CCCAAAGUUGAGGUAAGUUUUCCUUACUUCUCAAUUGCUGUACAAUUUAUU____GCCAAUUGAAGGAU ........((......((((((((.....))))))))(((((((....................))))))).)).. ( -8.77 = -9.29 + 0.52)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:37:05 2011