| Sequence ID | dm3.chr2L |
|---|---|
| Location | 11,171,507 – 11,171,604 |
| Length | 97 |
| Max. P | 0.728163 |
| Location | 11,171,507 – 11,171,604 |
|---|---|
| Length | 97 |
| Sequences | 4 |
| Columns | 97 |
| Reading direction | forward |
| Mean pairwise identity | 65.22 |
| Shannon entropy | 0.55999 |
| G+C content | 0.65199 |
| Mean single sequence MFE | -35.42 |
| Consensus MFE | -20.46 |
| Energy contribution | -22.34 |
| Covariance contribution | 1.88 |
| Combinations/Pair | 1.35 |
| Mean z-score | -0.89 |
| Structure conservation index | 0.58 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.52 |
| SVM RNA-class probability | 0.728163 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 11171507 97 + 23011544 GGCAUGGUGGAGCCGGGUAGCCAGAAGAAGCAGCGGGCGCUGAAUAAGCUGGAGCUGGAGCUGCAUACGGGCAGGAGGCACCGGCAAUGGCCACAAA ......((((.(((((....((((......((((....))))......)))).(((....((((......))))..))).))))).....))))... ( -36.70, z-score = -0.86, R) >droSec1.super_3 6572750 97 + 7220098 GGCAGGGUGGAGCCGGAUAGCCAGACGGGGCAGCGGGUGCAGAAUAAGCUUGAGCUGGAGCUGCAUACGGGCAGGAGGCACCGGCCAGGGCCACAAA (((.((.(((.(((.....(((......)))..((..(((((....(((....)))....)))))..)).......))).))).))...)))..... ( -38.90, z-score = -1.64, R) >droEre2.scaffold_4929 12370288 88 - 26641161 GGCAGGGUGGUGCCGGAUAGCCAGGCGCAGCAGCGGGCG---------CUACAGCUGGAGCUGCAUACGGGCAGGAAGCACCGGCAAGGGCCACAAA (((...((((((((((....))...(((....)))))))---------)))).(((((.(((((......))....))).)))))....)))..... ( -36.90, z-score = -0.80, R) >droGri2.scaffold_15252 2824568 80 + 17193109 GGCAAGGAGGAGCUGGAAUGCUAGAGCCACCGCCGCCCG-------AGCUGCCGCCAUAAGCGGAUUUGCGCAGACGGGUCAGAUCA---------- (((..((.((..((((....))))..)).)))))(((((-------.((..((((.....))))....)).....))))).......---------- ( -29.20, z-score = -0.28, R) >consensus GGCAGGGUGGAGCCGGAUAGCCAGACGCAGCAGCGGGCG_______AGCUGCAGCUGGAGCUGCAUACGGGCAGGAGGCACCGGCAAGGGCCACAAA (((.((.(((((((.....(((.......(((((.(((...............)))...))))).....)))....))))))).))...)))..... (-20.46 = -22.34 + 1.88)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:31:41 2011