| Sequence ID | dm3.chrX |
|---|---|
| Location | 12,269,440 – 12,269,535 |
| Length | 95 |
| Max. P | 0.695244 |
| Location | 12,269,440 – 12,269,535 |
|---|---|
| Length | 95 |
| Sequences | 4 |
| Columns | 97 |
| Reading direction | forward |
| Mean pairwise identity | 65.38 |
| Shannon entropy | 0.55162 |
| G+C content | 0.41949 |
| Mean single sequence MFE | -23.98 |
| Consensus MFE | -11.77 |
| Energy contribution | -13.65 |
| Covariance contribution | 1.88 |
| Combinations/Pair | 1.23 |
| Mean z-score | -1.26 |
| Structure conservation index | 0.49 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.44 |
| SVM RNA-class probability | 0.695244 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 12269440 95 + 22422827 --AACAGUAGGAACAUCUGGCUGAUUUGUGGUUCGUUUCCUCCGAAGAUUAACAAAUUAGCAAGAGGGAUAUUUGGCCAUUAACGAACUGACUACUA --...(((((...(.(((.((((((((((..((((.......)))).....)))))))))).))).)....((((........))))....))))). ( -22.00, z-score = -0.94, R) >droSec1.super_21 30540 95 + 1102487 --AACAGUAGGAACAUCUGGCUGAUUUGUGGUUCCUUCACUCCGAGGAUUAACAAAUUAGCAAGAGGGGUCGUUGGCCAUUAACGAACUGGCUACUA --...(((((.....(((.((((((((((...(((((......)))))...)))))))))).))).((.((((((.....)))))).))..))))). ( -31.20, z-score = -2.65, R) >droSim1.chrX 9433109 88 + 17042790 --AACAGUAGGAACAUCUGGCUGAUUUGUGGUUCCUUCACUCCGAGGAUUAACAAAUUAGCAAGAGGGGUGGUUGGCCAUUAACGAACUG------- --..((((.....(.(((.((((((((((...(((((......)))))...)))))))))).))).)(((((....))))).....))))------- ( -28.60, z-score = -2.58, R) >droWil1.scaffold_181123 223327 89 - 1459946 AAAAGAGAAGUAAUGUUUUGUUUGUGUAUUGAUGAAUUGAGCUGCAGGGAAACAAAUUUCAAAAUGAUUGCCAAGGGCUUCGGCUAUGC-------- ......(((((...((((.(((..(......)..))).)))).....(....)..))))).........((....(((....)))..))-------- ( -14.10, z-score = 1.14, R) >consensus __AACAGUAGGAACAUCUGGCUGAUUUGUGGUUCCUUCACUCCGAAGAUUAACAAAUUAGCAAGAGGGGUCGUUGGCCAUUAACGAACUG_______ ....((((.....(.(((.((((((((((...(((((......)))))...)))))))))).))).).....(((........)))))))....... (-11.77 = -13.65 + 1.88)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:37:04 2011