| Sequence ID | dm3.chrX |
|---|---|
| Location | 12,249,540 – 12,249,641 |
| Length | 101 |
| Max. P | 0.982750 |
| Location | 12,249,540 – 12,249,641 |
|---|---|
| Length | 101 |
| Sequences | 4 |
| Columns | 107 |
| Reading direction | reverse |
| Mean pairwise identity | 58.69 |
| Shannon entropy | 0.66997 |
| G+C content | 0.49053 |
| Mean single sequence MFE | -32.98 |
| Consensus MFE | -11.46 |
| Energy contribution | -10.15 |
| Covariance contribution | -1.31 |
| Combinations/Pair | 1.56 |
| Mean z-score | -2.33 |
| Structure conservation index | 0.35 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 2.11 |
| SVM RNA-class probability | 0.982750 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 12249540 101 - 22422827 ACUCAGUCU-CUCAGUAGCUAGAGUUCCACUUCAAAGUGCUUGGGGUUUGUCAUUAAAAGUGACAGCCCGCA---GCAGCUUUAGC-AACUCCUAUGG-CUUCGGGU ((((((((.-...(((.(((((((((..(((....)))(((.((((((.(((((.....)))))))))).))---)))))))))))-.))).....))-))..)))) ( -33.20, z-score = -2.19, R) >droEre2.scaffold_4690 4149938 100 + 18748788 -GUUUGCCCUUUCAUUAGCUGAGAUUCCA-UUCGUAGUGCUUAGGGUUUGUCAUUAGAGGCGACAACCCGCA---GCAGCUGCAGC-AACUCCUUCGG-CUGCGGGA -....(((((.......((((.((.....-.)).))))....)))))(((((......)))))...((((((---((.((....))-..(......))-))))))). ( -30.80, z-score = -0.18, R) >droSec1.super_21 10142 103 - 1102487 AUUUAACCCGCUCAGUAGCCAGAGUUCCACUUCAAAGUGCUGGGGGUUUGUCAUUAAAAGUGACAGCCCGCA---GCAGCUUUAGCAAACUCCUAUGG-CUUCGGGG ......((((......((((((((((...((..(((((((((.(((((.(((((.....)))))))))).))---))).))))))..)))))...)))-)).)))). ( -41.00, z-score = -3.83, R) >droGri2.scaffold_15081 385386 95 + 4274704 ---------AUUCACUAAUUCAAAAGUG--CCUGCAGUGAGUGCACUUUCGCACUCAAAUUGCGCAUUUGCACUCAAAAAGGCGUCGAACUCCAACAAUCUUCGAG- ---------..................(--(((....((((((((..(.((((.......)))).)..))))))))...)))).(((((...........))))).- ( -26.90, z-score = -3.14, R) >consensus __UUAGCCC_CUCAGUAGCUAAAAUUCCA_UUCAAAGUGCUUGGGGUUUGUCAUUAAAAGUGACAACCCGCA___GCAGCUGCAGC_AACUCCUACGG_CUUCGGG_ ..........(((...(((((............(((((.....(((((.(((((.....))))))))))((....)).)))))............))).))..))). (-11.46 = -10.15 + -1.31)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:37:01 2011