| Sequence ID | dm3.chrX |
|---|---|
| Location | 12,246,751 – 12,246,865 |
| Length | 114 |
| Max. P | 0.977908 |
| Location | 12,246,751 – 12,246,865 |
|---|---|
| Length | 114 |
| Sequences | 4 |
| Columns | 115 |
| Reading direction | reverse |
| Mean pairwise identity | 76.49 |
| Shannon entropy | 0.35889 |
| G+C content | 0.48048 |
| Mean single sequence MFE | -29.18 |
| Consensus MFE | -17.59 |
| Energy contribution | -18.59 |
| Covariance contribution | 1.00 |
| Combinations/Pair | 1.15 |
| Mean z-score | -2.63 |
| Structure conservation index | 0.60 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.98 |
| SVM RNA-class probability | 0.977908 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 12246751 114 - 22422827 AAAAACGAUGGAAAGUGUGUGGAAAAGCCCAAACACUCGGCAAAAACA-UCCAUUUGCCGUCUCUUUCGCUUGCCACGCUGUCCGUCUCUUUCUUGGCGGGUCAUUAUCCUCGAA .....(((.(((....((((((..((((.........(((((((....-....)))))))........)))).))))))((((((((........)))))).))...)))))).. ( -36.43, z-score = -3.36, R) >droSim1.chrX 9411921 96 - 17042790 ----------AAAAGUGUGUGGA-------AAACACUCGGC-AAAACC-UCCACUUGCCGUCUCUUUCGCUUGCCACGCUGCCCGUCUCUUUCUUGGCGGGUCAUUAUCCUCCAA ----------...((((((.(((-------((.....((((-((....-.....))))))....)))).)....))))))(((((((........)))))))............. ( -26.90, z-score = -2.61, R) >droSec1.super_21 7507 106 - 1102487 AAAAACAUUGGAAAGUGUGUGGA-------AAACAAUCGGC-AAAACC-UCCACUUGCCGUCUCUUUCACUUGCCACGCUGCCCGUCUCUUUCUUGGCGGGUCAUUAUCCUCGAA .........(((.((((((.(((-------((.....((((-((....-.....))))))....)))).)....))))))(((((((........))))))).....)))..... ( -29.80, z-score = -2.47, R) >droEre2.scaffold_4690 4147387 96 + 18748788 ----------AAAAACAU-UGGA-------AAAUGUGUGAAAAAGCCCAAAUACUUUGCGUCUCUUUCGC-UGAAACGCUGCCCGUCUCUUUCUUGGCGGGUCAUUAUCCUCGAA ----------........-.(((-------.((((.((((((.(((.(((.....))).).)).))))))-.........(((((((........))))))))))).)))..... ( -23.60, z-score = -2.08, R) >consensus __________AAAAGUGUGUGGA_______AAACACUCGGC_AAAACC_UCCACUUGCCGUCUCUUUCGCUUGCCACGCUGCCCGUCUCUUUCUUGGCGGGUCAUUAUCCUCGAA ................((((((...............((((((...........)))))).............))))))((((((((........)))))).))........... (-17.59 = -18.59 + 1.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:37:01 2011