| Sequence ID | dm3.chrX |
|---|---|
| Location | 12,211,724 – 12,211,831 |
| Length | 107 |
| Max. P | 0.942902 |
| Location | 12,211,724 – 12,211,831 |
|---|---|
| Length | 107 |
| Sequences | 6 |
| Columns | 114 |
| Reading direction | reverse |
| Mean pairwise identity | 66.77 |
| Shannon entropy | 0.64039 |
| G+C content | 0.53061 |
| Mean single sequence MFE | -35.98 |
| Consensus MFE | -12.57 |
| Energy contribution | -14.86 |
| Covariance contribution | 2.29 |
| Combinations/Pair | 1.23 |
| Mean z-score | -2.12 |
| Structure conservation index | 0.35 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.49 |
| SVM RNA-class probability | 0.942902 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 12211724 107 - 22422827 AGCUGGACAGGUUCGAGUGCUGCAAUUAAACGCAUUGCGAAU-------CCGUCGAGGGCCAGACCUUCGAGAAGGGGCUUCCACGCUCUCGGCAAGAAUUAAUGUCCACCUCA ((.(((((((((((((((((...........))))).)))))-------).(((((((((....((((....))))((...))..))))))))).........)))))).)).. ( -38.60, z-score = -1.79, R) >droSim1.chrX_random 3350297 106 - 5698898 AGCUGGACAGGUUCGAGUGGUGCAAUUAAACGCAUUGCGAAU-------CCGACGAGGGCCAGACCUUCGAGGA-GGGCUUCCACGCUCUCGGCCAGAAUUAAUGUCCACCUCA ((.((((((.((((..(..((((........))))..)....-------((..((((((.....))))))..((-((((......))))))))...))))...)))))).)).. ( -38.60, z-score = -1.60, R) >droYak2.chrX 20120542 106 + 21770863 AGCUGGACAGGUUCGAGUGCUGCAAUUAAACGCAUUACGCAU-------CCGACGAGAGCCAGACCUUCGAGGA-GGACUCCCACGCUCUCGGCCAGAAUUAAUGUCCACCUCA ((.((((((((((((..((((((........)))....))).-------.)))(((((((.((.((((....))-)).)).....))))))))))........)))))).)).. ( -33.10, z-score = -1.46, R) >droEre2.scaffold_4690 4114703 112 + 18748788 AGCUGGACAGGUUCGAGUGCUGCAAUUAAACGCACUGCGAAU-CCGACGCCGACGAGGGCCAGACCUUCGAGUA-GGGCUGCCCCGCUCUCGGCCAGAAUUAAUGUCCAGCUCA ((((((((((((((((((((...........))))).)))))-)....(((((.(((((.....)))))(((..-(((...)))..)))))))).........))))))))).. ( -50.90, z-score = -3.93, R) >droAna3.scaffold_13335 2191312 86 + 3335858 AGCUGGACAGGUUCGAGUGCUGCAAUUAAACGCAUUACG-------------------------CUUCCCAGGCGAGAUUUCU---UUCUCCGCCUGAAUUAAUGUCCUGGCAA .((((((((((.....(((.(((........))).))).-------------------------...))(((((((((.....---.))).))))))......))))).))).. ( -30.60, z-score = -3.05, R) >droWil1.scaffold_180777 3970177 113 - 4753960 AGUUGGACA-UUUCAAUUGUGGCAAUUAAAUGUAAUACACCUGCCAACGCCCCCCACCACUUGGUUUCUCUACUUCUCCCACACUCAUUUCACCCAAGUCUUGGGUCUUGUUGG .((...(((-(((.(((((...)))))))))))...)).....((((((...((((..((((((.............................))))))..))))...)))))) ( -24.05, z-score = -0.87, R) >consensus AGCUGGACAGGUUCGAGUGCUGCAAUUAAACGCAUUACGAAU_______CCGACGAGGGCCAGACCUUCGAGGA_GGGCUUCCACGCUCUCGGCCAGAAUUAAUGUCCACCUCA ....(((((.((((..(((.(((........))).)))...............(((((((.........................)))))))....))))...)))))...... (-12.57 = -14.86 + 2.29)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:36:56 2011