Locus 14260

Sequence ID	dm3.chrX
Location	12,203,414 – 12,203,468
Length	54
Max. P	0.604058

overview

Window 6

Location	12,203,414 – 12,203,468
Length	54
Sequences	6
Columns	54
Reading direction	reverse
Mean pairwise identity	94.69
Shannon entropy	0.10127
G+C content	0.32827
Mean single sequence MFE	-10.60
Consensus MFE	-9.48
Energy contribution	-9.53
Covariance contribution	0.06
Combinations/Pair	1.11
Mean z-score	-1.48
Structure conservation index	0.89
Background model	dinucleotide
Decision model	sequence based alignment quality
SVM decision value	0.23
SVM RNA-class probability	0.604058
Prediction	RNA

Download alignment: ClustalW | MAF

>dm3.chrX 12203414 54 - 22422827
GUUUGAUUUGGUUAUGAGAACAGUUUUCACUUUGAUUUUGUUACCAUCGAAAUG
.(((((..((((.(..(((.(((........))).)))..).)))))))))... ( -10.00, z-score =  -1.25, R)
>droSim1.chrX_random 3340683 54 - 5698898
GUUUGAUUUGGUUAUGAGAACAGUUUUCACUUUGAUUUUGUUACCAUCGAAAUG
.(((((..((((.(..(((.(((........))).)))..).)))))))))... ( -10.00, z-score =  -1.25, R)
>droSec1.super_45 218814 54 - 245362
GUUUGAUUUGGUUAUGAGAACAGUUUUCACUUUGAUUUUGUUACCAUCGAAAUG
.(((((..((((.(..(((.(((........))).)))..).)))))))))... ( -10.00, z-score =  -1.25, R)
>droYak2.chrX 20112472 54 + 21770863
GUUUGAUUUGGUUAUGAGAACAGUUUUCACUUUGAUUUUGUUACCAUCGAAAUG
.(((((..((((.(..(((.(((........))).)))..).)))))))))... ( -10.00, z-score =  -1.25, R)
>droEre2.scaffold_4690 4106866 54 + 18748788
GUUUGAUUUGGUUAUGAGAGCAGUUUUCACUUUGAUCUUGUUACCAUCGAAAUG
.(((((..((((.(..(((.(((........))).)))..).)))))))))... ( -12.60, z-score =  -2.06, R)
>dp4.chrXL_group1a 2891106 53 - 9151740
GUUUGAUUUGGUUAUGAGAGCCA-UUUCGCUUUGAUUUUUUGACCAUCGAAAUG
.(((((..(((((((.(((((..-....))))).)).....))))))))))... ( -11.00, z-score =  -1.85, R)
>consensus
GUUUGAUUUGGUUAUGAGAACAGUUUUCACUUUGAUUUUGUUACCAUCGAAAUG
.(((((..((((.((((((.(((........))).)))))).)))))))))... ( -9.48 =  -9.53 +   0.06)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:36:55 2011