Locus 1426

Sequence ID dm3.chr2L
Location 11,162,266 – 11,162,386
Length 120
Max. P 0.937859
window1942

overview

Window 2

Location 11,162,266 – 11,162,386
Length 120
Sequences 3
Columns 120
Reading direction reverse
Mean pairwise identity 99.44
Shannon entropy 0.00765
G+C content 0.58889
Mean single sequence MFE -37.69
Consensus MFE -37.10
Energy contribution -37.10
Covariance contribution 0.00
Combinations/Pair 1.00
Mean z-score -1.88
Structure conservation index 0.98
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 1.42
SVM RNA-class probability 0.937859
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chr2L 11162266 120 - 23011544
GGAAUUCAACAGAGAUCGCAGCUCCAAGGAUCGCGAAAGGGAUCUCGAGUGGGAGCGGGAACGGGCUCGCGAGUGGGAGAGAGAGCGGGAACGAGAUUGGGAUAGGGAGUUCGAUUGGGA
.((((((.......(((.(((((((..(((((.(....).)))))......))))).....((..(((((..............)))))..))....)).)))...))))))........ ( -38.74, z-score =  -2.42, R)
>droSec1.super_3 6563478 120 - 7220098
GGAGUUCAACAGAGAUCGCAGCUCCAAGGAUCGCGAAAGGGAUCUCGAGUGGGAGCGGGAACGGGCUCGCGAGUGGGAGAGAGAGCGGGAACGAGAUUGGGAUAGGGAGUUCGAUUGGGA
(((.(((......((((...(((((..(((((.(....).)))))......))))).....((..(((((..............)))))..)).)))).......))).)))........ ( -37.16, z-score =  -1.60, R)
>droSim1.chr2L 10962251 120 - 22036055
GGAGUUCAACAGAGAUCGCAGCUCCAAGGAUCGCGAAAGGGAUCUCGAGUGGGAGCGGGAACGGGCUCGCGAGUGGGAGAGAGAGCGGGAACGAGAUUGGGAUAGGGAGUUCGAUUGGGA
(((.(((......((((...(((((..(((((.(....).)))))......))))).....((..(((((..............)))))..)).)))).......))).)))........ ( -37.16, z-score =  -1.60, R)
>consensus
GGAGUUCAACAGAGAUCGCAGCUCCAAGGAUCGCGAAAGGGAUCUCGAGUGGGAGCGGGAACGGGCUCGCGAGUGGGAGAGAGAGCGGGAACGAGAUUGGGAUAGGGAGUUCGAUUGGGA
.........(...(((((.((((((....(((.(((......(((((.(((((..((....))..)))))...))))).......((....))...))).)))..)))))))))))..). (-37.10 = -37.10 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:31:40 2011