| Sequence ID | dm3.chrX |
|---|---|
| Location | 12,200,677 – 12,200,783 |
| Length | 106 |
| Max. P | 0.908815 |
| Location | 12,200,677 – 12,200,783 |
|---|---|
| Length | 106 |
| Sequences | 6 |
| Columns | 110 |
| Reading direction | reverse |
| Mean pairwise identity | 53.08 |
| Shannon entropy | 0.90714 |
| G+C content | 0.53456 |
| Mean single sequence MFE | -29.72 |
| Consensus MFE | -7.96 |
| Energy contribution | -8.80 |
| Covariance contribution | 0.84 |
| Combinations/Pair | 1.50 |
| Mean z-score | -1.64 |
| Structure conservation index | 0.27 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.20 |
| SVM RNA-class probability | 0.908815 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 12200677 106 - 22422827 GCCACCUGGCGGCUAAUGCUGCCAGCUCACCAACACAGGCGCACCGGGGAAAACUCG----CACAGACACACACACAUGGAUAUAUGCCGGAAAAGCAUAUCUACGCUUU .....((((((((....))))))))...........(((((...((((.....))))----................((((((..(((.......)))))))))))))). ( -28.10, z-score = -0.97, R) >droEre2.scaffold_4690 4104202 86 + 18748788 GCCACCUGGCGGCUAAUGCUGCCAGCUCACCAACACAGGCGC------------------------GCACACACACAUGCAUGGCUGCCGGAAAAGCAUAUCUACGCUUU .((..((((((((....))))))))............((((.------------------------((.((..(....)..)))))))))).(((((........))))) ( -27.80, z-score = -1.03, R) >droYak2.chrX 20109568 109 + 21770863 GCCACCUGGCGGCUAAUGCUGCCAGCUCACCAACACAGACGCA-CGAGGAAAAUUCGUGCACACACACACACACACAUAGGUGGAUGCCGAAAGAGCAUAUCUACGCUUU .((((((((((((....)))))).................(((-((((.....)))))))..................))))))(((((....).))))........... ( -38.50, z-score = -4.61, R) >droAna3.scaffold_13335 2181410 101 + 3335858 GCCACCUGGCGGCUAAUGCUGCCAGCUUACCAAUACGAAUGCAAAAAGCACA---------CACACACAGAGACAGAGACACAGAGACAGGGCAAGGAUAUCUACGUUUU (((..((((((((....))))))))..............(((.....)))..---------.............................)))................. ( -22.10, z-score = -1.31, R) >droWil1.scaffold_180708 12383720 107 - 12563649 ---ACGCUGCCGGCAGCGCUGCUUGCUGCCUACUACGUCAUCAUCAAAUCAACAGAGCACAUGCAUACACACACAGACGCAACGCUACAUGAACUGUAUGUGUAUGCGUG ---..(((...(((((((.....)))))))......(....).............))).((((((((((((.((((...((........))..)))).)))))))))))) ( -35.40, z-score = -1.61, R) >droMoj3.scaffold_6359 357006 93 - 4525533 CCUAUAUUAUGCUUAAAAUC-CCGUCCGGCCACUGCCGGCGCACAGAUUAGG------------AGGCAAGCAGACACAGUUAGUUGUAGCUGCUACCUGGCCCAG---- ((.......(((((..((((-.((.(((((....)))))))....))))...------------)))))(((((..((((....))))..)))))....)).....---- ( -26.40, z-score = -0.30, R) >consensus GCCACCUGGCGGCUAAUGCUGCCAGCUCACCAACACAGGCGCA_CGAGGAAA_________CACACACACACACACAUACAUAGAUGCAGGAAAAGCAUAUCUACGCUUU .....((((((((....))))))))..................................................................................... ( -7.96 = -8.80 + 0.84)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:36:53 2011