| Sequence ID | dm3.chrX |
|---|---|
| Location | 12,177,035 – 12,177,142 |
| Length | 107 |
| Max. P | 0.772700 |
| Location | 12,177,035 – 12,177,142 |
|---|---|
| Length | 107 |
| Sequences | 4 |
| Columns | 107 |
| Reading direction | reverse |
| Mean pairwise identity | 77.83 |
| Shannon entropy | 0.33617 |
| G+C content | 0.51314 |
| Mean single sequence MFE | -25.38 |
| Consensus MFE | -19.17 |
| Energy contribution | -18.93 |
| Covariance contribution | -0.25 |
| Combinations/Pair | 1.19 |
| Mean z-score | -1.45 |
| Structure conservation index | 0.76 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.64 |
| SVM RNA-class probability | 0.772700 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 12177035 107 - 22422827 UUUCUUCUUGCCUCCCGCCUAAUGAGACACAUCGUCAGGCGUUUUUGGACCAGGACUAGGACCAGGACCAGGACGACCACGACUGGAACGACUAGCACUAAUUGCUC ..((.(((((..((((((((.((((......)))).)))))....(((.((.......)).)))))).))))).))(((....))).......((((.....)))). ( -26.40, z-score = -0.28, R) >droSim1.chrX_random 3325590 85 - 5698898 UUUCUUCUGUCCUCCCGCCUAAUGAGACACAUCGUCAGGCG-UUUUGGACCAGGACCAGGACUAGG---------------------ACGACUAGCACUAAUUGCUC .......((((((...((((.((((......)))).))))(-((((((.......))))))).)))---------------------)))...((((.....)))). ( -25.70, z-score = -1.80, R) >droSec1.super_45 193970 85 - 245362 UUUCUUCUGUCCUCCCGCCUAAUGAGACACAUCGUCAGGCG-UUUUGGACCAGGACCAGGACUAGG---------------------ACGACUAGCACUAAUUGCUC .......((((((...((((.((((......)))).))))(-((((((.......))))))).)))---------------------)))...((((.....)))). ( -25.70, z-score = -1.80, R) >droYak2.chrX 20087713 97 + 21770863 AGUUUUUUGUCCUCCCGCCUAAUGAGACACAUCAUCAGGCG-UUUUGGACCAGAACUACCACGACUACGACUACGACU---------AGGACUGGCACUAAUUGCUC ((((((..((((...(((((.((((......)))).)))))-....)))).)))))).(((...(((((....))..)---------))...)))............ ( -23.70, z-score = -1.92, R) >consensus UUUCUUCUGUCCUCCCGCCUAAUGAGACACAUCGUCAGGCG_UUUUGGACCAGGACCAGGACUAGG_____________________ACGACUAGCACUAAUUGCUC ....((((((((...(((((.((((......)))).))))).....))).)))))......................................((((.....)))). (-19.17 = -18.93 + -0.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:36:53 2011