| Sequence ID | dm3.chrX |
|---|---|
| Location | 12,174,816 – 12,174,906 |
| Length | 90 |
| Max. P | 0.650223 |
| Location | 12,174,816 – 12,174,906 |
|---|---|
| Length | 90 |
| Sequences | 10 |
| Columns | 115 |
| Reading direction | reverse |
| Mean pairwise identity | 92.59 |
| Shannon entropy | 0.13952 |
| G+C content | 0.38906 |
| Mean single sequence MFE | -17.86 |
| Consensus MFE | -15.64 |
| Energy contribution | -15.65 |
| Covariance contribution | 0.01 |
| Combinations/Pair | 1.04 |
| Mean z-score | -1.48 |
| Structure conservation index | 0.88 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.34 |
| SVM RNA-class probability | 0.650223 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 12174816 90 - 22422827 UGUGAAACAGUGCAUAUCGAAUGAGUUUCCGAUAG-UUAUCUGCUUAAAAAUCGAUUAACCUAUUUCCGAUAACUACUGCAAUGCGCAUCC------------------------ ((((...(((((..(((((((((.(((..((((..-(((......)))..))))...))).))))..)))))..))))).....))))...------------------------ ( -17.10, z-score = -1.53, R) >droSim1.chrX_random 3323366 90 - 5698898 UGUGAAACAGUGCAUAUCGAAUGAGUUUCCGAUAG-UUAUCUGCUUAAAAAUCGAUUAACCUAUUUCCGAUAACUACUGCAAUGCGCAUCC------------------------ ((((...(((((..(((((((((.(((..((((..-(((......)))..))))...))).))))..)))))..))))).....))))...------------------------ ( -17.10, z-score = -1.53, R) >droSec1.super_45 191777 90 - 245362 UGUGAAACAGUGCAUAUCGAAUGAGUUUCCGAUAG-UUAUCUGCUUAAAAAUCGAUUAACCUAUUUCCGAUAACUACUGCAAUGCGCAUCC------------------------ ((((...(((((..(((((((((.(((..((((..-(((......)))..))))...))).))))..)))))..))))).....))))...------------------------ ( -17.10, z-score = -1.53, R) >droYak2.chrX 20085515 90 + 21770863 UGUGAAACAGUGCAUAUCGAAUGAGUUUCCGAUAG-UUAUCUGCUUAAAAAUCGAUUAACCUAUUUCCGAUAACUACUGCAAUGCGCAUCC------------------------ ((((...(((((..(((((((((.(((..((((..-(((......)))..))))...))).))))..)))))..))))).....))))...------------------------ ( -17.10, z-score = -1.53, R) >droEre2.scaffold_4690 4080184 90 + 18748788 UGUGAAACAGUGCAUAUCGAAUGAGUUUCCGAUAG-UUAUCUGCUUAAAAAUCGAUUAACCUAUUUCCGAUAACUACUGCAAUGCGCAUCC------------------------ ((((...(((((..(((((((((.(((..((((..-(((......)))..))))...))).))))..)))))..))))).....))))...------------------------ ( -17.10, z-score = -1.53, R) >dp4.chrXL_group1a 2860731 90 - 9151740 UGUGAAACAGUGCAUAUCGAAUGAGUUUCCGAUAG-UUAUCCGCUUAAAAAUCGAUUAACCUAUUUCCGAUAACUACUGCAAUGCGCAUCC------------------------ ((((...(((((..(((((((((.(((..((((..-(((......)))..))))...))).))))..)))))..))))).....))))...------------------------ ( -17.10, z-score = -1.59, R) >droPer1.super_12 2010823 90 + 2414086 UGUGAAACAGUGCAUAUCGAAUGAGUUUCCGAUAG-UUAUCCGCUUAAAAAUCGAUUAACCUAUUUCCGAUAACUACUGCAAUGCGCAUCC------------------------ ((((...(((((..(((((((((.(((..((((..-(((......)))..))))...))).))))..)))))..))))).....))))...------------------------ ( -17.10, z-score = -1.59, R) >droAna3.scaffold_13335 2156694 90 + 3335858 UGUGAAACAGUGCAUAUCGAAUGAGUUUCCGAUAG-UUAUCCGCUUAAAAAUCGAUUAACCCAUUUCCGAUAACUACUGCAAUGCGCAUCC------------------------ ((((...(((((..(((((((((.(((..((((..-(((......)))..))))...))).))))..)))))..))))).....))))...------------------------ ( -19.00, z-score = -2.36, R) >droWil1.scaffold_180777 3933300 92 - 4753960 UGUGAAACAGUGCAUAUCGAAUGAGUUUCCGAUAG-UUAUCCGCUUAAAAAUCGAUUAACCUAUUUCCGAUAACUACUGCAAUGCGCAGAUUC---------------------- ((((...(((((..(((((((((.(((..((((..-(((......)))..))))...))).))))..)))))..))))).....)))).....---------------------- ( -17.30, z-score = -1.11, R) >droVir3.scaffold_12928 3752598 115 - 7717345 UGUGAAACAGUGCAUAUCGUAUGAGUUUCCGAUAGUUUAUUCGCUUAAAAAUCGAUUAACCUAUUUCCGAUAACUACUGCAAUGCGCAUCCUCAUCCGCAUCCGCAUCCGCGGCC .((((....((((((...(((..((((..((((((.(((.(((.........))).))).))))...))..))))..))).))))))....))))......((((....)))).. ( -22.60, z-score = -0.53, R) >consensus UGUGAAACAGUGCAUAUCGAAUGAGUUUCCGAUAG_UUAUCCGCUUAAAAAUCGAUUAACCUAUUUCCGAUAACUACUGCAAUGCGCAUCC________________________ ((((...(((((..(((((((((.(((..((((...(((......)))..))))...))).))))..)))))..))))).....))))........................... (-15.64 = -15.65 + 0.01)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:36:52 2011