| Sequence ID | dm3.chrX |
|---|---|
| Location | 12,170,798 – 12,170,890 |
| Length | 92 |
| Max. P | 0.988191 |
| Location | 12,170,798 – 12,170,890 |
|---|---|
| Length | 92 |
| Sequences | 5 |
| Columns | 92 |
| Reading direction | forward |
| Mean pairwise identity | 93.36 |
| Shannon entropy | 0.12047 |
| G+C content | 0.35901 |
| Mean single sequence MFE | -19.45 |
| Consensus MFE | -17.62 |
| Energy contribution | -17.66 |
| Covariance contribution | 0.04 |
| Combinations/Pair | 1.05 |
| Mean z-score | -2.69 |
| Structure conservation index | 0.91 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 2.31 |
| SVM RNA-class probability | 0.988191 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 12170798 92 + 22422827 ACUACAAACAAGCUAUAACAAGGCAAAUACAUCAAGGUGUUUGCAUUACAUUAGCGUUAAAUGGUGUUAACUUACACACACAUACACACACU ...........((((.......((((((((......)))))))).......))))((......((((......))))......))....... ( -19.34, z-score = -3.00, R) >droSim1.chrX_random 3319100 92 + 5698898 ACUACAAACAAGCUAUAACAAGGCAAAUACAUCAAGGUGUUUGCAUUACAUUAGCGUUAAAUGGUGUUAACUUACACACACACACACACACU ...........((((.......((((((((......)))))))).......))))......((((((......)))).))............ ( -18.64, z-score = -2.74, R) >droYak2.chrX 20081537 88 - 21770863 ACUACAAACAAGCUAUAACAAGGCAAAUACAUCAAGGUGUUUGCAUUACAUUAGCGUUAAAUGGUGUUAACUUACACACACACACACU---- ...........((((.......((((((((......)))))))).......))))......((((((......)))).))........---- ( -18.64, z-score = -2.78, R) >droEre2.scaffold_4690 4076312 90 - 18748788 ACUACAAACAAGCUAUAACAAGGCAAAUACAUCAAGGUGUUUGCAUUACAUUAGCGUUAAAUGGUGUUAACUUACACACACACGCACACA-- ...........((((.......((((((((......)))))))).......))))((......((((......))))......)).....-- ( -18.94, z-score = -2.29, R) >droAna3.scaffold_13335 2152133 92 - 3335858 ACUACAAACAAGCGAUAACAAGGCAAAUACAUCAAAGUGUUUGCUUUACAUUAGCGUUAAAUGGUGUUAACUUACACCCACACACUUGCACA ...........((((....(((((((((((......)))))))))))...............(((((......))))).......))))... ( -21.70, z-score = -2.66, R) >consensus ACUACAAACAAGCUAUAACAAGGCAAAUACAUCAAGGUGUUUGCAUUACAUUAGCGUUAAAUGGUGUUAACUUACACACACACACACACAC_ ...........((((.......((((((((......)))))))).......))))((....((((((......)))).))...))....... (-17.62 = -17.66 + 0.04)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:36:51 2011