| Sequence ID | dm3.chrX |
|---|---|
| Location | 12,136,879 – 12,136,996 |
| Length | 117 |
| Max. P | 0.960751 |
| Location | 12,136,879 – 12,136,996 |
|---|---|
| Length | 117 |
| Sequences | 4 |
| Columns | 127 |
| Reading direction | reverse |
| Mean pairwise identity | 83.38 |
| Shannon entropy | 0.25515 |
| G+C content | 0.48442 |
| Mean single sequence MFE | -33.10 |
| Consensus MFE | -24.56 |
| Energy contribution | -25.56 |
| Covariance contribution | 1.00 |
| Combinations/Pair | 1.14 |
| Mean z-score | -2.47 |
| Structure conservation index | 0.74 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.68 |
| SVM RNA-class probability | 0.960751 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 12136879 117 - 22422827 ---CCAAACCGCCCAU-CUUAACCCCAUAAUGCCCAUACUUCCUUUGAUCGAUCGGUGGA------GGUGGCAUUUAAUUCGCAGUUGCUGAUUGAAUGCCGAGACGAAUUCCCAUCAGAGUUCAAA ---............(-(((.................((((((.((((....)))).)))------)))(((((((((((.((....)).))))))))))))))).((((((......))))))... ( -32.80, z-score = -2.58, R) >droSec1.super_45 154884 122 - 245362 ---CCAAACCGCCCAUCCUUAACCCCAUACUGCCCAUACUUCUUCU--UUGGUCGGUGGAGCAUUUGGUGGCAUUUAAUUCGCAGUUGCUGAUUGAAUGCCGAGACGAAUUCCCAUCAGAGUUCAAA ---..............(((....(((...(((((((...((....--..))...)))).)))..))).(((((((((((.((....)).))))))))))))))..((((((......))))))... ( -34.20, z-score = -2.25, R) >droYak2.chrX 20047242 114 + 21770863 CACCCAAACC-CCCGU-UUUAACCCCAUACAGCCUCAACUUCU-----UUGGGCGGUAGA------GGUGGCAUUUAAUUCGCAGUUGUUGAUUGAAUGCCGAGACGAAUUCCCAUCAGAGUUCAAA ..........-...((-(((.(((...(((.(((.(((.....-----)))))).)))..------)))(((((((((((.((....)).))))))))))))))))((((((......))))))... ( -34.70, z-score = -3.39, R) >droEre2.scaffold_4690 4043265 108 + 18748788 ----CCAACC-CCCGG-UUUAACCCCAUACUGCCC--ACUUCU-----UUGGGCGGUGGA------CGUGGCAUUUAAUUCGCAGUUGCUGAUUGACUGCCGAGACGAAUUCCCAUCAGAACUCAAA ----......-....(-(((.......((((((((--(.....-----.)))))))))..------..(((((.((((((.((....)).)))))).)))))))))((.(((......))).))... ( -30.70, z-score = -1.64, R) >consensus ___CCAAACC_CCCAU_CUUAACCCCAUACUGCCCAUACUUCU_____UUGGGCGGUGGA______GGUGGCAUUUAAUUCGCAGUUGCUGAUUGAAUGCCGAGACGAAUUCCCAUCAGAGUUCAAA ...........................((((((((...............))))))))..........((((((((((((.((....)).))))))))))))....((((((......))))))... (-24.56 = -25.56 + 1.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:36:46 2011