| Sequence ID | dm3.chrX |
|---|---|
| Location | 12,132,688 – 12,132,796 |
| Length | 108 |
| Max. P | 0.617874 |
| Location | 12,132,688 – 12,132,796 |
|---|---|
| Length | 108 |
| Sequences | 5 |
| Columns | 118 |
| Reading direction | reverse |
| Mean pairwise identity | 79.67 |
| Shannon entropy | 0.33153 |
| G+C content | 0.35470 |
| Mean single sequence MFE | -21.96 |
| Consensus MFE | -13.56 |
| Energy contribution | -14.80 |
| Covariance contribution | 1.24 |
| Combinations/Pair | 1.04 |
| Mean z-score | -1.77 |
| Structure conservation index | 0.62 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.26 |
| SVM RNA-class probability | 0.617874 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 12132688 108 - 22422827 --------GAAAGCACAUGUAAUAGAAUUUAUAAAAAUGUACAACCAUCCAUUCCACUUCUCACUUUCAAGUGACCCAAUUCUAUGGGUCAUGUUUAUUCUGCAA--GUGUGCGAAAC --------....((((((....((((((..((....(((......)))......................((((((((......))))))))))..))))))...--))))))..... ( -24.60, z-score = -2.74, R) >droSim1.chrX_random 3303033 107 - 5698898 --------GAAACCACAUGUUAUAGAAUUUAUAAAAAUGUACAACCA---ACCCCAGUUUUCACUUUCAAGUGACCCAAUUUUAUGGGUCAUGUUUAUUCUGCUAGUGUGUGCGAAAC --------....(((((..(((((((((..((...............---.....(((....))).....((((((((......))))))))))..)))))).)))..)))).).... ( -23.60, z-score = -1.94, R) >droSec1.super_45 150682 107 - 245362 --------GAAACCACAUGUUAUAGAAUUUAUAAAUAUGUACAACCA---ACCCUACUUUUGACUUUCAAGUGACCCAAUUUUAUGGGUCAUGUUUAUUCUGCUAGUGUGUGCGAAAC --------....(((((..(((((((((..(((..............---........((((.....))))(((((((......))))))))))..)))))).)))..)))).).... ( -24.90, z-score = -2.56, R) >droYak2.chrX 20042850 107 + 21770863 UCCAUCAUAAGAAACCAUGUAAUAGAAUUUAUAAAAAUAUACA-------UCCCCGCAUUUCACUUUCAAGCGACCCAAUU--AUGGGUCAUGUUUAUUCUGUAA--GUGUGCGAAAU ...............(((...(((((((..(((..........-------.....((.............))((((((...--.)))))).)))..)))))))..--)))........ ( -18.12, z-score = -1.28, R) >droEre2.scaffold_4690 4038928 96 + 18748788 ----------GAAACCAUGUAAUGGAUUUUAUAAGAAUGUACA-------U-CCCACUUUUCACUUUCAAGCGACCCAAUU--AUGGGUCAUGUUUAUUCUGCAA--GUGUGCGAAGU ----------((((((((...)))).))))...((((((.(((-------(-...........((....)).((((((...--.)))))))))).))))))(((.--...)))..... ( -18.60, z-score = -0.32, R) >consensus ________GAAAACACAUGUAAUAGAAUUUAUAAAAAUGUACAACCA___ACCCCACUUUUCACUUUCAAGUGACCCAAUU_UAUGGGUCAUGUUUAUUCUGCAA__GUGUGCGAAAC .............(((((....((((((..(((.............................(((....)))((((((......)))))).)))..)))))).....)))))...... (-13.56 = -14.80 + 1.24)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:36:45 2011