| Sequence ID | dm3.chrX |
|---|---|
| Location | 12,124,750 – 12,124,812 |
| Length | 62 |
| Max. P | 0.570054 |
| Location | 12,124,750 – 12,124,812 |
|---|---|
| Length | 62 |
| Sequences | 5 |
| Columns | 62 |
| Reading direction | reverse |
| Mean pairwise identity | 98.06 |
| Shannon entropy | 0.03493 |
| G+C content | 0.42581 |
| Mean single sequence MFE | -14.74 |
| Consensus MFE | -13.74 |
| Energy contribution | -13.78 |
| Covariance contribution | 0.04 |
| Combinations/Pair | 1.06 |
| Mean z-score | -1.37 |
| Structure conservation index | 0.93 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.16 |
| SVM RNA-class probability | 0.570054 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 12124750 62 - 22422827 CGAUGACACUCGACUUAAUUACAAUUAUUUGCACAGGUGUGCAGGUGAAUGCACUUGCAGAA (((......)))............((((((((((....)))))))))).(((....)))... ( -14.50, z-score = -1.16, R) >droEre2.scaffold_4690 4031373 62 + 18748788 CGAUGACACUCGACUUAAUUACAAUUAUUUGCACAGGUGUGCAGGUGACUGCACUUGCGGAA (((......)))...............((((((.....((((((....)))))).)))))). ( -17.80, z-score = -2.53, R) >droYak2.chrX 20034293 62 + 21770863 CGAUGACACUCGACUUAAUUACAAUUAUUUGCACAGGUGUGCAGGUGAAUGCACUUGCAGAA (((......)))............((((((((((....)))))))))).(((....)))... ( -14.50, z-score = -1.16, R) >droSec1.super_45 142716 62 - 245362 CGAUGACACUCGACUUAAUUACAAUUAUUUGCACAGGUGUGCAGGAGAAUGCACUUGCAGAA (((......)))...............((((((.....(((((......))))).)))))). ( -12.40, z-score = -0.83, R) >droSim1.chrX 9346343 62 - 17042790 CGAUGACACUCGACUUAAUUACAAUUAUUUGCACAGGUGUGCAGGUGAAUGCACUUGCAGAA (((......)))............((((((((((....)))))))))).(((....)))... ( -14.50, z-score = -1.16, R) >consensus CGAUGACACUCGACUUAAUUACAAUUAUUUGCACAGGUGUGCAGGUGAAUGCACUUGCAGAA (((......)))............((((((((((....)))))))))).(((....)))... (-13.74 = -13.78 + 0.04)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:36:41 2011