| Sequence ID | dm3.chrX |
|---|---|
| Location | 12,119,560 – 12,119,611 |
| Length | 51 |
| Max. P | 0.850773 |
| Location | 12,119,560 – 12,119,611 |
|---|---|
| Length | 51 |
| Sequences | 3 |
| Columns | 63 |
| Reading direction | reverse |
| Mean pairwise identity | 65.43 |
| Shannon entropy | 0.49019 |
| G+C content | 0.31425 |
| Mean single sequence MFE | -10.29 |
| Consensus MFE | -8.85 |
| Energy contribution | -10.07 |
| Covariance contribution | 1.23 |
| Combinations/Pair | 1.13 |
| Mean z-score | -0.72 |
| Structure conservation index | 0.86 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.91 |
| SVM RNA-class probability | 0.850773 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 12119560 51 - 22422827 UGCGGGAACUUGAUAAAGU------------UUACUAGUUGAAGUUUUUAAUUCAAACAGCUU .(((..(((((....))))------------)..)...(((((........)))))...)).. ( -8.50, z-score = -0.76, R) >droEre2.scaffold_4690 4026385 62 + 18748788 UGAGCAAACUUAAGCUAGUUCACUUUUCACAUCACUAGUUGUAGUUUUUGUAU-AAACAACUU ...(((((((..(((((((..............)))))))..)))..))))..-......... ( -7.84, z-score = 0.06, R) >droYak2.chrX 20029411 62 + 21770863 UUAGGAAACUGGAGCUAGUUCGCUCUUUCUAUUACUAGUUGUAGUUUUUGAAU-UAAAAGCUU ...((((((((.(((((((..............))))))).))))))))....-......... ( -14.54, z-score = -1.46, R) >consensus UGAGGAAACUUGAGCUAGUUC_CU_UU___AUUACUAGUUGUAGUUUUUGAAU_AAACAGCUU ...((((((((.(((((((..............))))))).)))))))).............. ( -8.85 = -10.07 + 1.23)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:36:38 2011