| Sequence ID | dm3.chrX |
|---|---|
| Location | 12,106,037 – 12,106,102 |
| Length | 65 |
| Max. P | 0.682059 |
| Location | 12,106,037 – 12,106,102 |
|---|---|
| Length | 65 |
| Sequences | 6 |
| Columns | 65 |
| Reading direction | forward |
| Mean pairwise identity | 68.60 |
| Shannon entropy | 0.61553 |
| G+C content | 0.40144 |
| Mean single sequence MFE | -14.25 |
| Consensus MFE | -4.11 |
| Energy contribution | -5.37 |
| Covariance contribution | 1.25 |
| Combinations/Pair | 1.20 |
| Mean z-score | -2.05 |
| Structure conservation index | 0.29 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.41 |
| SVM RNA-class probability | 0.682059 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 12106037 65 + 22422827 GCAAUCGCCUUUUCAAGGUGCUUGAAAAACUCGUAUCUGUGAGAUACAGAUAUCUCACGAUUUUA .(((.(((((.....))))).)))..........(((.((((((((....))))))))))).... ( -17.20, z-score = -2.82, R) >droEre2.scaffold_4690 4013138 64 - 18748788 GCAAUCGCCUUUUCAAGGUGCUUCAAAA-CUCGUAUCUGUGAGAUACAGAUAUCUUACGAUUUUA ..((((.........((((((.......-...))))))((((((((....))))))))))))... ( -13.20, z-score = -1.74, R) >droYak2.chrX 20016040 64 - 21770863 GUAAUCGCCGCUUCAAGGUGGUUCAAAA-GUCGUAUCUGUGAGAUACACAUAUCUUAGGAUUUUA (.(((((((.......)))))))).(((-((((((((.....))))).(........))))))). ( -14.20, z-score = -1.58, R) >droSec1.super_45 124621 53 + 245362 GCAAUCGCCUUUUCAAGGGGCCUCAAAA-CUCGUAUCUGUGAGAUACGAUUUUA----------- ......(((((.....)))))....(((-.(((((((.....))))))).))).----------- ( -13.90, z-score = -2.22, R) >droSim1.chrU 1548349 64 - 15797150 GCAAUCGCCUUUUCAAGGUGCCUCAAAA-CUCGUAUCUGUGAGAUACAGAUAUCUCACGAUUUUA ..((((.........((((((.......-...))))))((((((((....))))))))))))... ( -14.90, z-score = -2.39, R) >droMoj3.scaffold_6359 214053 55 + 4525533 --------AAUGCCAAGAUUCCUGCGAA--UGCAGCCUAUGACAUGGAAACGGCAAACAAAUUUA --------..((((.......((((...--.))))..........(....))))).......... ( -12.10, z-score = -1.58, R) >consensus GCAAUCGCCUUUUCAAGGUGCCUCAAAA_CUCGUAUCUGUGAGAUACAGAUAUCUCACGAUUUUA .....(((((.....)))))............(((((.....))))).................. ( -4.11 = -5.37 + 1.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:36:31 2011