| Sequence ID | dm3.chrX |
|---|---|
| Location | 12,098,369 – 12,098,427 |
| Length | 58 |
| Max. P | 0.888062 |
| Location | 12,098,369 – 12,098,427 |
|---|---|
| Length | 58 |
| Sequences | 6 |
| Columns | 60 |
| Reading direction | reverse |
| Mean pairwise identity | 75.12 |
| Shannon entropy | 0.45677 |
| G+C content | 0.34905 |
| Mean single sequence MFE | -8.43 |
| Consensus MFE | -5.56 |
| Energy contribution | -5.20 |
| Covariance contribution | -0.36 |
| Combinations/Pair | 1.50 |
| Mean z-score | -1.43 |
| Structure conservation index | 0.66 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.08 |
| SVM RNA-class probability | 0.888062 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 12098369 58 - 22422827 UUUCCAAAGUAAUUGCAAUUGCACUUGCACUUGCAAUCCAGUUGUUGUUUUU--UAUCUC ....(((....(((((((.(((....))).)))))))....)))........--...... ( -11.80, z-score = -2.23, R) >droSim1.chrX_random 3278101 53 - 5698898 UUUCCAAAGUAAUUGCAA------AUGCACUUGCAAUCCAGUUGUUGUUUUU-CUAUCUC ....(((....(((((((------......)))))))....)))........-....... ( -6.90, z-score = -1.06, R) >droSec1.super_45 117016 53 - 245362 UUUCCAAAGUAAUUGCAA------AUGCACUUGCAAUCCAGUUGUUGUUUUU-CUAUCUC ....(((....(((((((------......)))))))....)))........-....... ( -6.90, z-score = -1.06, R) >droYak2.chrX 20008821 52 + 21770863 UUUCCAAAGUAAUUGCAA------UUGCACUUGCAAUCCAGUUGUUGUUUUUGCUCUC-- .......(((((..((((------((((....)))........)))))..)))))...-- ( -8.50, z-score = -0.96, R) >droEre2.scaffold_4690 4005622 51 + 18748788 CUUCCAAAGUAAUUGCAA------CGGCACUUGCAAUCCAGUUGUUGUUUUU-CUCUC-- .......((.((..((((------((((............))))))))..))-))...-- ( -7.60, z-score = -0.85, R) >droAna3.scaffold_13335 2080387 58 + 3335858 UCCCCUCAAUAAUUGCAUUUACUUUUGUG-UGAUUUUUCAGUUAUUGUUUAA-CAGUUAC ......(((((((((...((((......)-))).....))))))))).....-....... ( -8.90, z-score = -2.40, R) >consensus UUUCCAAAGUAAUUGCAA______UUGCACUUGCAAUCCAGUUGUUGUUUUU_CUAUCUC ........((((.((((........)))).)))).......................... ( -5.56 = -5.20 + -0.36)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:36:30 2011