| Sequence ID | dm3.chrX |
|---|---|
| Location | 12,097,931 – 12,098,028 |
| Length | 97 |
| Max. P | 0.690638 |
| Location | 12,097,931 – 12,098,028 |
|---|---|
| Length | 97 |
| Sequences | 5 |
| Columns | 103 |
| Reading direction | reverse |
| Mean pairwise identity | 93.78 |
| Shannon entropy | 0.10321 |
| G+C content | 0.58953 |
| Mean single sequence MFE | -36.73 |
| Consensus MFE | -26.60 |
| Energy contribution | -26.20 |
| Covariance contribution | -0.40 |
| Combinations/Pair | 1.08 |
| Mean z-score | -2.48 |
| Structure conservation index | 0.72 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.43 |
| SVM RNA-class probability | 0.690638 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 12097931 97 - 22422827 GGCU--CACGCACACGUACACAAACAC--GGGACGCGGUCACACAUA--CGUGUGCGAGCGAGAGGCAGUGAUGAUUUGCACGCGCUUACACGGAGCCGCAUA ((((--(.((((((((((........(--(.....))........))--))))))))((((....((((.......))))...))))......)))))..... ( -36.19, z-score = -2.39, R) >droSim1.chrX_random 3277667 98 - 5698898 GGCU--CACGCACACGUACACAAACAC-GGGGACGCCGUUACACACA--CGUGUGCGAGCGAGAGGCAGUGAUGAUUUGCACGCGCUUACACGGAGCCGCAUA ((((--(.(((((((((.....(((.(-(....))..)))......)--))))))))((((....((((.......))))...))))......)))))..... ( -38.40, z-score = -3.08, R) >droSec1.super_45 116581 99 - 245362 GGCU--CACGCACACGUACACAAACACGGGGGACGCCGUUACACACA--CGUGUGCGAGCGAGAGGCAGUAAUGAUUUGUACGCGCUUACACGGAGCCGCAUA ((((--(.(((((((((........((((......)))).......)--))))))))((((....((((.......))))...))))......)))))..... ( -36.76, z-score = -2.76, R) >droYak2.chrX 20008382 101 + 21770863 GGCUCGCACGCACACGUACACAAACAC--GGGACGCCGUCACACAUAUUUGUGUGCGAGCGAGAGGCAGCGAUGAUUUGCACGCGCUUACACGGAGCCGCAUA (((((((.((((((((.........((--((....))))..........)))))))).))...((((.(((.((.....))))))))).....)))))..... ( -37.41, z-score = -2.20, R) >droEre2.scaffold_4690 4005183 97 + 18748788 GGCU--CACGCACACGUACACAAACAC--GGGACGCGGUCACACACA--CGUGUGCGAGCGAGAGGCAGCGAUGAUUUGCACGCGCUUACACGGAGCCGCAUA ((((--(.(((((((((.........(--(.....)).........)--))))))))..((.(((((.(((.((.....))))))))).).)))))))..... ( -34.87, z-score = -1.95, R) >consensus GGCU__CACGCACACGUACACAAACAC__GGGACGCCGUCACACACA__CGUGUGCGAGCGAGAGGCAGUGAUGAUUUGCACGCGCUUACACGGAGCCGCAUA ((((....(((((((((......))......(((...)))..........)))))))((((....((((.......))))...)))).......))))..... (-26.60 = -26.20 + -0.40)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:36:30 2011