| Sequence ID | dm3.chrX |
|---|---|
| Location | 12,095,404 – 12,095,494 |
| Length | 90 |
| Max. P | 0.869479 |
| Location | 12,095,404 – 12,095,494 |
|---|---|
| Length | 90 |
| Sequences | 6 |
| Columns | 107 |
| Reading direction | reverse |
| Mean pairwise identity | 74.61 |
| Shannon entropy | 0.45413 |
| G+C content | 0.51878 |
| Mean single sequence MFE | -23.15 |
| Consensus MFE | -11.85 |
| Energy contribution | -12.96 |
| Covariance contribution | 1.11 |
| Combinations/Pair | 1.12 |
| Mean z-score | -1.94 |
| Structure conservation index | 0.51 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.99 |
| SVM RNA-class probability | 0.869479 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 12095404 90 - 22422827 ACCCAACGCAGUGGGACGUCUAUGCGGUCAACUCCUACUGCUUUUGGGA--------UUAUUCUCUGGCCAUC-GCCAG----UUCCCGAUCCCUACUAUCCA---- .......((((((((((((....)))......)))))))))....((((--------((.....(((((....-)))))----.....)))))).........---- ( -30.80, z-score = -3.65, R) >droSim1.chrX_random 3274635 94 - 5698898 ACCCAACUCAGUGGGACGUCUUCGCGGUCAACUCCUACUGCUUUUGGUC--------AUAUUCUCUGGCCAGC-GCCAG----UUCCCGAUCCCUACUAUCCAACCA .........((((((........(((((........)))))....((((--------.......(((((....-)))))----.....))))))))))......... ( -22.30, z-score = -1.29, R) >droSec1.super_45 114065 94 - 245362 ACCCAACUCAGUGGGACGUCUUCGCGGUCAACUCCUACUGCUUUUGGGC--------AUAUUCUCUGGCCAGC-GCCAG----UUCCCGAUCCCUACUAUCCAACCA .(((((..(((((((((((....)))......))))))))...))))).--------.......(((((....-)))))----........................ ( -24.10, z-score = -1.14, R) >droYak2.chrX 20005820 80 + 21770863 ACCCAACUCAGUGGAACG--------------UCCUACUGCUUAUGGGC--------AUAUUCUUUGGCCAUC-GCCAG----UCCCUGAUCCCUACCAUUCAUCCA .......((((.(((..(--------------(((..........))))--------.......(((((....-)))))----)))))))................. ( -17.70, z-score = -1.26, R) >droEre2.scaffold_4690 4002718 93 + 18748788 ACCCAACUCAGUGGGACGUCUUCGCGGUCAACUCCUACUGCUUUUGGCC--------AUAUUC-UCGGCCAUC-GCCAG----UCCCCGAUCCCUACCAUCCAUCCG ..........(.(((((......(((((........)))))...(((((--------......-..)))))..-....)----)))))................... ( -23.20, z-score = -2.25, R) >droAna3.scaffold_13335 2076050 105 + 3335858 ACCCAACUCAGUGGGUUGUCUUUGCGGUCAACUCCUACCGCUUUUAUUUUAUUUUUGGUAUUUUUUUUUUUUUGGUCAGAUCCCCCUCGAUCCCUAAAAUACCUU-- (((((......))))).......(((((........)))))...............((((((((.........((...((((......)))))).))))))))..-- ( -20.80, z-score = -2.05, R) >consensus ACCCAACUCAGUGGGACGUCUUCGCGGUCAACUCCUACUGCUUUUGGGC________AUAUUCUCUGGCCAUC_GCCAG____UCCCCGAUCCCUACUAUCCAUCCA ..((((..((((((((................))))))))...)))).................(((((.....)))))............................ (-11.85 = -12.96 + 1.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:36:29 2011