Locus 14236

Sequence ID dm3.chrX
Location 12,095,194 – 12,095,249
Length 55
Max. P 0.951862
window19602

overview

Window 2

Location 12,095,194 – 12,095,249
Length 55
Sequences 6
Columns 57
Reading direction reverse
Mean pairwise identity 92.76
Shannon entropy 0.13486
G+C content 0.44024
Mean single sequence MFE -17.83
Consensus MFE -14.30
Energy contribution -13.92
Covariance contribution -0.39
Combinations/Pair 1.12
Mean z-score -2.66
Structure conservation index 0.80
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 1.58
SVM RNA-class probability 0.951862
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chrX 12095194 55 - 22422827
GCGGA--UGUGUGUGUACAGUUAUAAUUAAGUGAUACACAUAAACGGGCGCCCCAGA
..(..--(((((((((.((.(((....))).)))))))))))..)(((...)))... ( -17.00, z-score =  -2.14, R)
>droAna3.scaffold_13335 2075829 55 + 3335858
ACGGA--UGUGUGUGUACAGUUAUAAUUAAGUGAUACACAUAAACGGGCGCCCCAGA
..(..--(((((((((.((.(((....))).)))))))))))..)(((...)))... ( -17.00, z-score =  -2.31, R)
>droEre2.scaffold_4690 4002476 55 + 18748788
GCGGA--UGUGUGUGUACAGUUAUAAUUAAGUGAUACACAUAAACGGGCGCCCCAGA
..(..--(((((((((.((.(((....))).)))))))))))..)(((...)))... ( -17.00, z-score =  -2.14, R)
>droYak2.chrX 20005588 55 + 21770863
GCGGA--UGUGUGUGUACAGUUAUAAUUAAGUGAUACACAUAAAUGGGCGCCCCAGA
.....--(((((((((.((.(((....))).)))))))))))..((((...)))).. ( -16.40, z-score =  -2.01, R)
>droSec1.super_45 113827 57 - 245362
GCGGAUGUGUGUGUGUACAGUUAUAAUUAAGUGAUACACAUAAACGGGCGCCCCAGA
(((..(((.((((((((((.(((....))).)).)))))))).)))..)))...... ( -18.90, z-score =  -2.41, R)
>droSim1.chrX_random 3274412 57 - 5698898
GCGGAUGUGUGUGUGUACAGUUAUAAUUAAGUGAUACACAUAAACGUUCGAAGGGGA
.(((((((.((((((((((.(((....))).)).)))))))).)))))))....... ( -20.70, z-score =  -4.98, R)
>consensus
GCGGA__UGUGUGUGUACAGUUAUAAUUAAGUGAUACACAUAAACGGGCGCCCCAGA
.......(((((((((.((.(((....))).)))))))))))...(((...)))... (-14.30 = -13.92 +  -0.39)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:36:28 2011