| Sequence ID | dm3.chrX |
|---|---|
| Location | 12,089,032 – 12,089,145 |
| Length | 113 |
| Max. P | 0.803941 |
| Location | 12,089,032 – 12,089,145 |
|---|---|
| Length | 113 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 91.73 |
| Shannon entropy | 0.15628 |
| G+C content | 0.50897 |
| Mean single sequence MFE | -41.58 |
| Consensus MFE | -34.01 |
| Energy contribution | -34.37 |
| Covariance contribution | 0.36 |
| Combinations/Pair | 1.03 |
| Mean z-score | -1.97 |
| Structure conservation index | 0.82 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.74 |
| SVM RNA-class probability | 0.803941 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 12089032 113 - 22422827 AUGUACCAUUGUAUCGGCCAUUAGGCCGGCGCUGCCAACUUGAUUGUAAUUGAAUUGCAC-------ACUGCUGACGUUCGCGGUGCUGCCAUCGCAGUGCUGUCAAAGUACAGUGAAAA ......(((((((((((((....)))))(((((((..((......))....((...((((-------(((((........)))))).)))..))))))))).......)))))))).... ( -41.40, z-score = -2.19, R) >droAna3.scaffold_13335 2069533 106 + 3335858 AUGUAGCAUUGUAUCGGCCAUUAGGCCGGCGCUGCCAACUUGAUUGUAAUUGAAUUGCAC-------ACUGCUGACGUUCGCGGAGCUGCUAUU-CGGUG------GGGUACAGUGGAGC ......(((((((((((((....))))....(..((.((......))....((((.((((-------.((((........)))).).))).)))-)))..------)))))))))).... ( -36.20, z-score = -0.62, R) >droEre2.scaffold_4690 3996567 120 + 18748788 AUGUACCAUUGUAUCGGCCAUUAGGCCGGCGCUGCCAACUUGAUUGUAAUUGAAUUGCACACUGCUGACUGCUGACGGUCGCGGUGCUGCCAUCGCAGUGCUGUCCAAGUACAGUGAAAA ......(((((((((((((....)))))(((((((..((......))....((...(((((((((.(((((....))))))))))).)))..))))))))).......)))))))).... ( -47.80, z-score = -2.92, R) >droYak2.chrX 19999417 113 + 21770863 AUGUACCAUUGUAUCGGCCAUUGGGCCGGCGCUGCCAACUUGAUUGUAACUGAAUUGCAC-------ACUGCUGACGUUCGCGGUGCUGCCAUCGCAGUGCUGUCAAAGUACAGUGAAAG ......(((((((((((((....)))))(((((((..((......))....((...((((-------(((((........)))))).)))..))))))))).......)))))))).... ( -41.30, z-score = -1.68, R) >droSec1.super_45 107897 113 - 245362 AUGUACCAUUGUAUCGGCCAUUAGGCCGGCGCUGCCAACUUGAUUGUAAUUGAAUUGCAC-------ACUGCUGACGUUCGCGGUGCUGCCAUCGCAGUGCUGUCAAAGUACAGUGAAAA ......(((((((((((((....)))))(((((((..((......))....((...((((-------(((((........)))))).)))..))))))))).......)))))))).... ( -41.40, z-score = -2.19, R) >droSim1.chrX 9333067 113 - 17042790 AUGUACCAUUGUAUCGGCCAUUAGGCCGGCGCUGCCAACUUGAUUGUAAUUGAAUUGCAC-------ACUGCUGACGUUCGCGGUGCUGCCAUCGCAGUGCUGUCAAAGUACAGUGAAAA ......(((((((((((((....)))))(((((((..((......))....((...((((-------(((((........)))))).)))..))))))))).......)))))))).... ( -41.40, z-score = -2.19, R) >consensus AUGUACCAUUGUAUCGGCCAUUAGGCCGGCGCUGCCAACUUGAUUGUAAUUGAAUUGCAC_______ACUGCUGACGUUCGCGGUGCUGCCAUCGCAGUGCUGUCAAAGUACAGUGAAAA ......(((((((((((((....)))))(((((((.........(((((.....)))))........(((((........))))).........))))))).......)))))))).... (-34.01 = -34.37 + 0.36)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:36:27 2011