| Sequence ID | dm3.chrX |
|---|---|
| Location | 12,086,089 – 12,086,186 |
| Length | 97 |
| Max. P | 0.923205 |
| Location | 12,086,089 – 12,086,186 |
|---|---|
| Length | 97 |
| Sequences | 4 |
| Columns | 101 |
| Reading direction | forward |
| Mean pairwise identity | 79.09 |
| Shannon entropy | 0.32897 |
| G+C content | 0.34659 |
| Mean single sequence MFE | -21.23 |
| Consensus MFE | -13.20 |
| Energy contribution | -13.20 |
| Covariance contribution | 0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -2.32 |
| Structure conservation index | 0.62 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.30 |
| SVM RNA-class probability | 0.923205 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 12086089 97 + 22422827 AUCGAA----AAAAAAAAAAAAUUCCAUGAUUCCAUGAGUCACAUAUUGUGCGAUACGAAUUGACUUGAAGUCGACUGCAAAUGCAGUUGCAUUCGAUUAA ((((((----..........(((((((((....)))).(.(((.....)))).....)))))........(.(((((((....)))))))).))))))... ( -21.90, z-score = -1.95, R) >droSec1.super_45 105060 101 + 245362 AUCGAAACAAAAAAAAAAAAAAUGCAAUGAUUCCAUGAGUCACAUAUUGGGCGAUACGAAUUGACUUGAAGUCGACUGCAAAUGCAGUUGCAUUCGAUUAA ((((((.....................((((((...))))))....(..((((((....)))).))..).(.(((((((....)))))))).))))))... ( -22.00, z-score = -1.57, R) >droYak2.chrX 19996493 88 - 21770863 AUCGAA------AAAGAAAUAGUUCCAUGAGUCCAC-------AUAUUGGGCGAUACGAAUUGACUUGAACUCGACUGCAAAUGCAGUUGCAUUCGAUUUA ((((((------.......((((((.....(((((.-------....))))).....)))))).........(((((((....)))))))..))))))... ( -23.50, z-score = -2.54, R) >droEre2.scaffold_4690 3992337 83 - 18748788 AUCGAA-CAAAAAAAAAAAAAA----AUAGUUCCAA-------AUAGU------UCCGAAUUGUCUUGAACUCGACUGCAAAUGCAGUUGCAUUCGAUUAA ((((((-...............----..(((((...-------(((((------.....)))))...)))))(((((((....)))))))..))))))... ( -17.50, z-score = -3.22, R) >consensus AUCGAA____AAAAAAAAAAAAUUCCAUGAUUCCAU_______AUAUUGGGCGAUACGAAUUGACUUGAACUCGACUGCAAAUGCAGUUGCAUUCGAUUAA .................................................................(((((..(((((((....)))))))..))))).... (-13.20 = -13.20 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:36:26 2011