| Sequence ID | dm3.chrX |
|---|---|
| Location | 12,081,491 – 12,081,564 |
| Length | 73 |
| Max. P | 0.749981 |
| Location | 12,081,491 – 12,081,564 |
|---|---|
| Length | 73 |
| Sequences | 5 |
| Columns | 86 |
| Reading direction | forward |
| Mean pairwise identity | 62.26 |
| Shannon entropy | 0.64571 |
| G+C content | 0.29383 |
| Mean single sequence MFE | -13.30 |
| Consensus MFE | -3.98 |
| Energy contribution | -5.46 |
| Covariance contribution | 1.48 |
| Combinations/Pair | 1.33 |
| Mean z-score | -1.95 |
| Structure conservation index | 0.30 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.58 |
| SVM RNA-class probability | 0.749981 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 12081491 73 + 22422827 ----CUUUGUUUUCUUUGAUCAUAUUCAAACACUCUAUUUUAUUAUUGUUCUUGUUUUUGAGAGCAGUGGAAUUUUU--------- ----..........(((((......)))))............(((((((((((......))))))))))).......--------- ( -12.50, z-score = -1.72, R) >droSim1.chrX 9326763 81 + 17042790 ----UUUUGUUUUCGUUGAUCAUAUUCAAACACUCCAUUUUAUUAUUGCUCUU-UUUUUGAGAGCAGUGUAUUUCAUGGAAUUUUU ----...........((((......))))....(((((.....((((((((((-.....))))))))))......)))))...... ( -18.70, z-score = -3.94, R) >droSec1.super_45 101466 81 + 245362 ----UUUUGUUUUCUUUGAUCAUAUUCAAACACUCCACUUUAUUAUUGCUCUU-UUUUUGAGAGCAGUGUAUUUCACGGAAUUUUU ----..........(((((......)))))...(((..........(((((((-.....)))))))(((.....))))))...... ( -16.80, z-score = -3.59, R) >droEre2.scaffold_4690 3989579 81 - 18748788 ----UUUUAUUUGCUUUGAGCCUGUUCGAAAACGCCAUUUUAUAAUUAUUCCU-UUUUCGAGUGCAGUGUGUUCCAUGGAAUUUUU ----...............(((((((((((((.....................-)))))))..)))).))((((....)))).... ( -10.00, z-score = 0.38, R) >apiMel3.Group15 1217307 75 - 7856270 CCAGGUCUGAAGCAUUUG--UACAUUUGAAUAUUAUCUUUAUCUAUUGCUCGUACAUCUUCUUUCCUUAAAAUACCU--------- ..(((...((((....((--(((............................))))).))))...)))..........--------- ( -8.49, z-score = -0.91, R) >consensus ____UUUUGUUUUCUUUGAUCAUAUUCAAACACUCCAUUUUAUUAUUGCUCUU_UUUUUGAGAGCAGUGUAUUUCAUGGAAUUUUU ..............(((((......))))).............((((((((((......))))))))))................. ( -3.98 = -5.46 + 1.48)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:36:24 2011