| Sequence ID | dm3.chrX |
|---|---|
| Location | 12,079,259 – 12,079,325 |
| Length | 66 |
| Max. P | 0.975886 |
| Location | 12,079,259 – 12,079,325 |
|---|---|
| Length | 66 |
| Sequences | 4 |
| Columns | 69 |
| Reading direction | forward |
| Mean pairwise identity | 94.07 |
| Shannon entropy | 0.09406 |
| G+C content | 0.41222 |
| Mean single sequence MFE | -8.10 |
| Consensus MFE | -7.78 |
| Energy contribution | -7.78 |
| Covariance contribution | -0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.39 |
| Structure conservation index | 0.96 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.81 |
| SVM RNA-class probability | 0.824603 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 12079259 66 + 22422827 CCGUAUUCUGAUUUCUCCCUACGCGUUUCAAUCUCGGCUUUCUUAUCAAUUAAGCCGCACUUUUUU--- .((((....(....)....))))...........((((((...........)))))).........--- ( -7.60, z-score = -1.30, R) >droEre2.scaffold_4690 3987440 66 - 18748788 CCGUAUUCUGAUUUCUCCCUACGCGUUUCAAUCUCGGCUUUCUUAUCAAUUAAGCCGACCUUUUUU--- .((((....(....)....))))..........(((((((...........)))))))........--- ( -9.60, z-score = -2.14, R) >droYak2.chrX 19989309 69 - 21770863 CCGUAUUCUGAUUUCUCCCUACGCGUUUCAAUCUCGGCUUUCUUAUCAAUUAAGCCGCCUUUAUUUUUU .((((....(....)....))))...........((((((...........))))))............ ( -7.60, z-score = -1.14, R) >droSec1.super_45 99327 66 + 245362 CCGUAUUCUGAUUUCUCCCUACGCGCUUCAAUCUCGGCUUUCUUAUCAAUUAAGCCGCCCUUUUUU--- .((((....(....)....))))...........((((((...........)))))).........--- ( -7.60, z-score = -1.00, R) >consensus CCGUAUUCUGAUUUCUCCCUACGCGUUUCAAUCUCGGCUUUCUUAUCAAUUAAGCCGCCCUUUUUU___ .((((....(....)....))))...........((((((...........))))))............ ( -7.78 = -7.78 + -0.00)
| Location | 12,079,259 – 12,079,325 |
|---|---|
| Length | 66 |
| Sequences | 4 |
| Columns | 69 |
| Reading direction | reverse |
| Mean pairwise identity | 94.07 |
| Shannon entropy | 0.09406 |
| G+C content | 0.41222 |
| Mean single sequence MFE | -13.60 |
| Consensus MFE | -13.07 |
| Energy contribution | -13.08 |
| Covariance contribution | 0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -2.16 |
| Structure conservation index | 0.96 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.94 |
| SVM RNA-class probability | 0.975886 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 12079259 66 - 22422827 ---AAAAAAGUGCGGCUUAAUUGAUAAGAAAGCCGAGAUUGAAACGCGUAGGGAGAAAUCAGAAUACGG ---.........((((((...........))))))...........((((..((....))....)))). ( -13.10, z-score = -2.01, R) >droEre2.scaffold_4690 3987440 66 + 18748788 ---AAAAAAGGUCGGCUUAAUUGAUAAGAAAGCCGAGAUUGAAACGCGUAGGGAGAAAUCAGAAUACGG ---....((..(((((((...........)))))))..))......((((..((....))....)))). ( -14.80, z-score = -2.69, R) >droYak2.chrX 19989309 69 + 21770863 AAAAAAUAAAGGCGGCUUAAUUGAUAAGAAAGCCGAGAUUGAAACGCGUAGGGAGAAAUCAGAAUACGG ....(((...(((..((((.....))))...)))...)))......((((..((....))....)))). ( -13.40, z-score = -2.32, R) >droSec1.super_45 99327 66 - 245362 ---AAAAAAGGGCGGCUUAAUUGAUAAGAAAGCCGAGAUUGAAGCGCGUAGGGAGAAAUCAGAAUACGG ---.......(((..((((.....))))...)))............((((..((....))....)))). ( -13.10, z-score = -1.64, R) >consensus ___AAAAAAGGGCGGCUUAAUUGAUAAGAAAGCCGAGAUUGAAACGCGUAGGGAGAAAUCAGAAUACGG ............((((((...........))))))...........((((..((....))....)))). (-13.07 = -13.08 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:36:23 2011