Locus 14227

Sequence ID dm3.chrX
Location 12,031,296 – 12,031,391
Length 95
Max. P 0.976843
window19588 window19589

overview

Window 8

Location 12,031,296 – 12,031,391
Length 95
Sequences 6
Columns 95
Reading direction forward
Mean pairwise identity 82.27
Shannon entropy 0.34343
G+C content 0.39955
Mean single sequence MFE -21.54
Consensus MFE -13.75
Energy contribution -13.98
Covariance contribution 0.22
Combinations/Pair 1.12
Mean z-score -1.59
Structure conservation index 0.64
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 0.16
SVM RNA-class probability 0.573777
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chrX 12031296 95 + 22422827
ACAGUUAACCGGAAUGAUAAUGAUAAUGAGCAUGAUAGGGAUGAUGAUGGGGUUUUGGCAUCGUCAUUAUCAUUACCAUUAACAAAAGGCCACCG
...(((((..(((((((((((((..(((..(((.((....)).)))............)))..))))))))))).)).)))))............ ( -21.34, z-score =  -0.54, R)
>droSim1.chrX 9283870 92 + 17042790
ACAGUUAACCGGAAUGAUAAUGAUAAUGAGCAUGAUAGGGAUGA---UGGGGUUUUGGCAUCGUCAUUAUCAUUACCAUUAACAAAAGGCCACCG
...(((((..(((((((((((((..(((..((.(((........---....))).)).)))..))))))))))).)).)))))............ ( -21.50, z-score =  -0.94, R)
>droSec1.super_45 57616 92 + 245362
ACAGUUACCCGGAAUGAUAAUGAUAAUGAGCAUGAUAGGGAUGA---CGGGGUUUUGGCAUCGUCAUUAUGAUUACCAUUAACAAAAGGCCACCG
...(((((((...(((...((....))...)))....))).)))---)((((((((((.(((((....)))))..)))........))))).)). ( -18.60, z-score =   0.21, R)
>droYak2.chrX 19949025 92 - 21770863
ACAGUUAGCCGGAAUGAUAAUGAUAAUGAGCAUGAUAGGGAUGAU--GGGGUUUUUGGCAUCGUCAUUAUCAUUACCAUUAACAAAAG-CCAACG
...(((.((...((((.((((((((((((..(((.(((((((...--...))))))).)))..)))))))))))).)))).......)-).))). ( -22.50, z-score =  -1.68, R)
>droEre2.scaffold_4690 3948358 91 - 18748788
ACAGUUAACCGGAAUGAUAAUGAUAAUGAGCAUGAUAGGGAUGA---UGGGGUUU-GGCAUCGUCAUUAUCAUUACCAUUAACAAAAGGCCACCG
...(((((..(((((((((((((..(((..(((.((....)).)---))......-..)))..))))))))))).)).)))))............ ( -20.60, z-score =  -0.72, R)
>droAna3.scaffold_13335 2008067 75 - 3335858
---------CGAAAUGAUAAUGAUAAUGAAC----UGCGGCUUU---CACCGUAUCAUCAUUAUCAUUAUCGUAACCAUUAACCAAGGACC----
---------....((((((((((((((((..----(((((....---..)))))...))))))))))))))))..................---- ( -24.70, z-score =  -5.85, R)
>consensus
ACAGUUAACCGGAAUGAUAAUGAUAAUGAGCAUGAUAGGGAUGA___UGGGGUUUUGGCAUCGUCAUUAUCAUUACCAUUAACAAAAGGCCACCG
..........((((((((((((((.(((..............................))).)))))))))))).)).................. (-13.75 = -13.98 +   0.22)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Window 9

Location 12,031,296 – 12,031,391
Length 95
Sequences 6
Columns 95
Reading direction reverse
Mean pairwise identity 82.27
Shannon entropy 0.34343
G+C content 0.39955
Mean single sequence MFE -23.62
Consensus MFE -14.31
Energy contribution -15.00
Covariance contribution 0.69
Combinations/Pair 1.05
Mean z-score -2.66
Structure conservation index 0.61
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 1.96
SVM RNA-class probability 0.976843
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chrX 12031296 95 - 22422827
CGGUGGCCUUUUGUUAAUGGUAAUGAUAAUGACGAUGCCAAAACCCCAUCAUCAUCCCUAUCAUGCUCAUUAUCAUUAUCAUUCCGGUUAACUGU
((((((((.......(((((((((((((((((.((((.........))))..(((.......))).)))))))))))))))))..)))).)))). ( -23.20, z-score =  -2.07, R)
>droSim1.chrX 9283870 92 - 17042790
CGGUGGCCUUUUGUUAAUGGUAAUGAUAAUGACGAUGCCAAAACCCCA---UCAUCCCUAUCAUGCUCAUUAUCAUUAUCAUUCCGGUUAACUGU
((((((((...((.((((((((((((..((((.((((...........---.))))....))))..)))))))))))).))....)))).)))). ( -22.90, z-score =  -2.16, R)
>droSec1.super_45 57616 92 - 245362
CGGUGGCCUUUUGUUAAUGGUAAUCAUAAUGACGAUGCCAAAACCCCG---UCAUCCCUAUCAUGCUCAUUAUCAUUAUCAUUCCGGGUAACUGU
((((.((((..((.((((((((((....((((.((((.(........)---.))))....))))....)))))))))).))....)))).)))). ( -21.60, z-score =  -1.37, R)
>droYak2.chrX 19949025 92 + 21770863
CGUUGG-CUUUUGUUAAUGGUAAUGAUAAUGACGAUGCCAAAAACCCC--AUCAUCCCUAUCAUGCUCAUUAUCAUUAUCAUUCCGGCUAACUGU
.(((((-((......(((((((((((((((((.((((..........)--)))....(......).)))))))))))))))))..)))))))... ( -25.80, z-score =  -4.07, R)
>droEre2.scaffold_4690 3948358 91 + 18748788
CGGUGGCCUUUUGUUAAUGGUAAUGAUAAUGACGAUGCC-AAACCCCA---UCAUCCCUAUCAUGCUCAUUAUCAUUAUCAUUCCGGUUAACUGU
((((((((.......(((((((((((((((((.((((..-......))---))....(......).)))))))))))))))))..)))).)))). ( -23.40, z-score =  -2.36, R)
>droAna3.scaffold_13335 2008067 75 + 3335858
----GGUCCUUGGUUAAUGGUUACGAUAAUGAUAAUGAUGAUACGGUG---AAAGCCGCA----GUUCAUUAUCAUUAUCAUUUCG---------
----(..((.........))...)((((((((((((((.....((((.---...))))..----..))))))))))))))......--------- ( -24.80, z-score =  -3.90, R)
>consensus
CGGUGGCCUUUUGUUAAUGGUAAUGAUAAUGACGAUGCCAAAACCCCA___UCAUCCCUAUCAUGCUCAUUAUCAUUAUCAUUCCGGUUAACUGU
...............(((((((((((((((((.((((.....................))))....)))))))))))))))))............ (-14.31 = -15.00 +   0.69)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:36:18 2011