| Sequence ID | dm3.chrX |
|---|---|
| Location | 12,028,336 – 12,028,433 |
| Length | 97 |
| Max. P | 0.832342 |
| Location | 12,028,336 – 12,028,433 |
|---|---|
| Length | 97 |
| Sequences | 5 |
| Columns | 107 |
| Reading direction | reverse |
| Mean pairwise identity | 67.70 |
| Shannon entropy | 0.57030 |
| G+C content | 0.39956 |
| Mean single sequence MFE | -22.38 |
| Consensus MFE | -9.38 |
| Energy contribution | -11.34 |
| Covariance contribution | 1.96 |
| Combinations/Pair | 1.19 |
| Mean z-score | -1.71 |
| Structure conservation index | 0.42 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.84 |
| SVM RNA-class probability | 0.832342 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 12028336 97 - 22422827 UCAUAACAUAUUGAUGCACUUCUUAGUACAG----------UUGUGCAAGCAAUCAAUUUAGCUGACGCUGCAGCCACAGUAAUCGAUAUGCCCAAUGCUAUCGAUA ........(((((.(((((..((......))----------..))))).............((((......))))..)))))(((((((.((.....))))))))). ( -22.20, z-score = -0.76, R) >droAna3.scaffold_13335 2004345 99 + 3335858 -----UCUCAUAAAAACACUUUCAAAUCCAAUUU--CAAUCCAGAAAUGGAAACCCACAACUGUUUCAGACUUCUCCCACCGAU-GAUUUGUUACUUGCUAUCGAUA -----.................((((((......--...((((....)))).........(((...)))...............-))))))................ ( -10.30, z-score = -0.11, R) >droEre2.scaffold_4690 3945657 107 + 18748788 GCAUAAUUUAUCGAUGCCCUCCUCAGUACAGUUACGCAAGUUUGUGCGAGGAAUCAACUUAACUGGCACUCAAGCCGCAAUAAUCGAUAUGCCCCAUGCUAUCGAUA ((..........(((....(((((.((((((..((....)))))))))))))))).........(((......)))))....(((((((.((.....))))))))). ( -31.20, z-score = -3.37, R) >droSec1.super_45 54349 97 - 245362 ACAUAACUUAUUGAUGCACUUCUUAGUACAG----------UUGUGCUAGGAAUCAAUUUAGAUGACACUGCAGCCACAGUAAUCGAUAUGCCCAAUGCUAUCGAUA .(((.....((((((.....(((((((((..----------..)))))))))))))))....)))..((((......)))).(((((((.((.....))))))))). ( -26.00, z-score = -2.71, R) >droSim1.chrX 9280975 97 - 17042790 ACAUAACUUAUUGAUGCACUUCUUAGUACAG----------UUGUGCUAGCAAUCAAUUUAGCUGACACUGCAGCCCCAGUAAUCGAUAUGCCCAAUGCUAUCGAUA .....(((.((((((((......((((((..----------..)))))))).))))))...((((......))))...))).(((((((.((.....))))))))). ( -22.20, z-score = -1.60, R) >consensus ACAUAACUUAUUGAUGCACUUCUUAGUACAG__________UUGUGCUAGCAAUCAAUUUAGCUGACACUGCAGCCACAGUAAUCGAUAUGCCCAAUGCUAUCGAUA ...................((((((((((((..........)))))))))))).............................(((((((.((.....))))))))). ( -9.38 = -11.34 + 1.96)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:36:16 2011