| Sequence ID | dm3.chrX |
|---|---|
| Location | 12,020,716 – 12,020,845 |
| Length | 129 |
| Max. P | 0.684433 |
| Location | 12,020,716 – 12,020,845 |
|---|---|
| Length | 129 |
| Sequences | 4 |
| Columns | 136 |
| Reading direction | reverse |
| Mean pairwise identity | 80.23 |
| Shannon entropy | 0.30771 |
| G+C content | 0.48931 |
| Mean single sequence MFE | -37.62 |
| Consensus MFE | -26.86 |
| Energy contribution | -27.18 |
| Covariance contribution | 0.31 |
| Combinations/Pair | 1.13 |
| Mean z-score | -1.63 |
| Structure conservation index | 0.71 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.41 |
| SVM RNA-class probability | 0.684433 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 12020716 129 - 22422827 CGGAUGGUGCCGAAUACCCACCUCCUUCUCCGCCCGGAAAAGUCGCAUCUGCCAAGUGUGAACUAC------UAGUGCUGGUAGGGCAAAAAAAAAAAAAAAUUGAAACAAAAA-AACUGGAAAGUAAUUUCCGGC .(((.((((.........)))))))......((((.......(((((.((....)))))))..(((------((....)))))))))...........................-..(((((((....))))))). ( -33.40, z-score = -1.80, R) >droSim1.chrX 9273256 115 - 17042790 CGGAUGGUGCAGAGUGCCCACCUCCUUCGCCG-CCGGAAAAGUCGCAUCUGCCAAGUGUGAACUACUAGGAGUAGUGCUGGUAGGGC-------------------AACAAAAA-AACUGGAAAGUAAUUUCCGGU .((((((.((.....)))))..)))...((((-((((.....(((((.((....)))))))(((((.....))))).)))))..)))-------------------........-.((((((((....)))))))) ( -38.90, z-score = -1.74, R) >droSec1.super_45 46672 131 - 245362 CGGAUGGUGCAGAAUGCCCACCUCCUUCUCCG-CCGGAAAAGUCGCAUCUGCCAAGUGUGAACUACUAGGAGUAGUGCUGGUAGGGC---AACAAAAAAAAAUGGAAACAAAAA-AACUGGCAAGUAAUUUCCGGU .((((((.((.....)))))..)))......(-(((((((..(((((.((....)))))))(((((.....)))))((..((..(..---..).........((....))....-.))..))......)))))))) ( -39.50, z-score = -1.80, R) >droYak2.chrX 19939017 119 + 21770863 CGGAUGGUGCGGAGUAACCAUCUCCUUCUCUG-CCGGAAAAGUCGCAUCUGCCAAGUGUGAACUGGUAAGAGUAGUGCUGCUGCUGGG----------------GCAACAAAAAGAACUGGCAAGUAAUUUCCGGU .(((((((........)))))))........(-(((((((((.(((.(((((((.((....)))))).)))...)))))(((((..(.----------------.(........)..)..)).)))..)))))))) ( -38.70, z-score = -1.20, R) >consensus CGGAUGGUGCAGAAUACCCACCUCCUUCUCCG_CCGGAAAAGUCGCAUCUGCCAAGUGUGAACUACUAGGAGUAGUGCUGGUAGGGC_________________GAAACAAAAA_AACUGGAAAGUAAUUUCCGGU .(((.((((.........)))))))........(((((((..(((((.((....))))))).(((((((........)))))))................................(((....)))..))))))). (-26.86 = -27.18 + 0.31)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:36:14 2011