| Sequence ID | dm3.chrX |
|---|---|
| Location | 12,016,155 – 12,016,250 |
| Length | 95 |
| Max. P | 0.702421 |
| Location | 12,016,155 – 12,016,250 |
|---|---|
| Length | 95 |
| Sequences | 8 |
| Columns | 117 |
| Reading direction | forward |
| Mean pairwise identity | 71.55 |
| Shannon entropy | 0.49325 |
| G+C content | 0.52655 |
| Mean single sequence MFE | -32.44 |
| Consensus MFE | -21.70 |
| Energy contribution | -20.83 |
| Covariance contribution | -0.87 |
| Combinations/Pair | 1.43 |
| Mean z-score | -0.89 |
| Structure conservation index | 0.67 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.45 |
| SVM RNA-class probability | 0.702421 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 12016155 95 + 22422827 ---------------------AACAUGAUAUGACGCGGAA-GAGGCCCUCGGGCAUUUCGGGCUGUCAACAAAAUGCAUUCAAUUGGAUGCAUUUCCUCCGGUCAGCCGACUGCAAU ---------------------.............((((..-((.(((....)))...)).(((((.(....((((((((((....))))))))))......).)))))..))))... ( -32.70, z-score = -2.00, R) >droAna3.scaffold_13335 1991223 95 - 3335858 ---------------------AACAUGAUGUGACGUGGAA-GCAGCCCUGGGGCUCGGUUCGCUGUCAACAAAAUGCAUUCAAUUGAGUGCACUUCCUCCGCUCCGUCAACUGCAAU ---------------------....(((((.((.((((((-((((((....))))......)))..........(((((((....))))))).....))))))))))))........ ( -29.20, z-score = -1.15, R) >droPer1.super_12 1844599 117 - 2414086 AACAUUUUAUGAUGCGGUAGCGGCAAGGCGGACCGCGGGUCGCGGCCUGCGGCCACAGCGAGCUGUCAACAAAAUGCAUCCAAUUGAAUGCACUCGACCGUGUCGGUUAACUGCUAC .............((((((.(((((.(((((.((((((((....))))))))))((((....))))........(((((.(....).)))))...).)).))))).)..)))))... ( -41.40, z-score = -0.64, R) >dp4.chrXL_group1a 2740879 117 + 9151740 AACAUUUUAUGAUGCGGUAGCGGCAAGGCGGACCGCGGGUCGCGGCCUGCGGCCACAGCGAGCUGUCAACAAAAUGCAUCCAAUUGAAUGCACUCGACCGUGUCGGUUAACUGCUAC .............((((((.(((((.(((((.((((((((....))))))))))((((....))))........(((((.(....).)))))...).)).))))).)..)))))... ( -41.40, z-score = -0.64, R) >droEre2.scaffold_4690 3934783 95 - 18748788 ---------------------AACAUGAUAUGAUGCGGAA-GAGGCCCUCGGGUAUUUCGGGCUGUCAACAAAACGCAUUCAACUGGAUGCAUUUCCUCCGGUCGGCCAGCUGCAAU ---------------------............(((((..-((.(((....)))...)).(((((.(....(((.((((((....)))))).)))......).)))))..))))).. ( -26.50, z-score = 0.16, R) >droYak2.chrX 19934957 95 - 21770863 ---------------------AACAUGAUAUGACGCGGAA-GAGGCCCUCGGGUAUUUCGGGCUGUCAACAAAACGCAUUCAAUCGAAUGCAUUUCCUCUGGUCGGCCAACUGCAUU ---------------------.............((((..-((.(((....)))...)).((((((((...(((.((((((....)))))).)))....))).)))))..))))... ( -26.90, z-score = -0.88, R) >droSec1.super_45 243061 95 - 245362 ---------------------AACAUGAUAUGACGCGGAA-GAGGCCCUCGGGCAUUUCGGGCUGCCAACAAAACGCAUUCAAUUGGAUGCAUUUCCUCCGGUCGGCCGACUGCAAU ---------------------.............((((..-...(((....)))...((((.(.(((....(((.((((((....)))))).))).....))).).))))))))... ( -29.40, z-score = -0.49, R) >droSim1.chrX 9269416 95 + 17042790 ---------------------AACAUGAUAUGACGCGGAA-GAGGCCCUCGGGCAUUUCGGGCUGUCAACAAAAUGCAUUCAAUUGGAUGCAUUUCCUCCGGUCGGCCGACUGCAAU ---------------------.............((((..-((.(((....)))...)).(((((.(....((((((((((....))))))))))......).)))))..))))... ( -32.00, z-score = -1.46, R) >consensus _____________________AACAUGAUAUGACGCGGAA_GAGGCCCUCGGGCAUUUCGGGCUGUCAACAAAAUGCAUUCAAUUGAAUGCAUUUCCUCCGGUCGGCCAACUGCAAU ..................................((((...((.(((....)))...)).(((((.(........((((((....))))))..........).)))))..))))... (-21.70 = -20.83 + -0.87)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:36:13 2011