| Sequence ID | dm3.chrX |
|---|---|
| Location | 11,999,128 – 11,999,199 |
| Length | 71 |
| Max. P | 0.508974 |
| Location | 11,999,128 – 11,999,199 |
|---|---|
| Length | 71 |
| Sequences | 6 |
| Columns | 71 |
| Reading direction | forward |
| Mean pairwise identity | 69.20 |
| Shannon entropy | 0.59945 |
| G+C content | 0.51211 |
| Mean single sequence MFE | -17.27 |
| Consensus MFE | -8.10 |
| Energy contribution | -9.87 |
| Covariance contribution | 1.77 |
| Combinations/Pair | 1.20 |
| Mean z-score | -0.93 |
| Structure conservation index | 0.47 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.03 |
| SVM RNA-class probability | 0.508974 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 11999128 71 + 22422827 GUCGCCGGCAAUCCUUUUGUCCAGAUUCUGCUCCUGUUCCCGAACACAAAGAGUAGAAAGCAGAGGCACAG ((.((((((((.....)))))....((((((((.((((....))))....))))))))......))))).. ( -20.60, z-score = -2.20, R) >droSim1.chrX 9259099 71 + 17042790 GUCGCCAGCAAUCCUUUUGUCCAGGUCCUGCUCCUGUUUCCGAACGCAAGGAGUAGAAAGCAGAGGCACAG ((.(((.((...(((.......)))..((((((((((........)).))))))))...))...))))).. ( -19.40, z-score = -0.83, R) >droSec1.super_45 220759 71 - 245362 GUCGCCAGCAAUCCUUUUGUCCAGGUCCUGCUCCUCUUCCCGAACACAAGGAGUAGAACGCAGGGGCACAG ((.(((.((((.....))))((.(((.((((((((.............)))))))).)).).))))))).. ( -20.02, z-score = -0.84, R) >droYak2.chrX 19918592 71 - 21770863 GUCGCCAGCAAUCCUUUUGUCCAGAUCCUGAUUCUGUUCCAUGACACAAGGAGUGGAAAAUAGAGGCACCG ...(((.((((.....)))).((((.......))))((((((..(....)..))))))......))).... ( -16.60, z-score = -0.58, R) >droEre2.scaffold_4690 3917691 71 - 18748788 GUCGCCAGCCAUCCUUUUGUCCAGGUCCUGCUCCUGCUCACCAGCACAAGGAGUGGAAAAUUGAGGCACAG ((.(((...((......))..(((.(((.(((((((((....)))...)))))))))...))).))))).. ( -19.10, z-score = -0.07, R) >droAna3.scaffold_13335 1974036 57 - 3335858 ----------AUCUUCCUG-CGACUUCCUUCCUGGAAACUCUGAAAGUCACUUUAGAAAAAAAAUGUA--- ----------.(((....(-.(((((.(.....(....)...).))))).)...)))...........--- ( -7.90, z-score = -1.05, R) >consensus GUCGCCAGCAAUCCUUUUGUCCAGGUCCUGCUCCUGUUCCCGAACACAAGGAGUAGAAAACAGAGGCACAG ...(((.((((.....)))).......((((((((.............))))))))........))).... ( -8.10 = -9.87 + 1.77)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:36:09 2011