| Sequence ID | dm3.chrX |
|---|---|
| Location | 11,985,592 – 11,985,700 |
| Length | 108 |
| Max. P | 0.650946 |
| Location | 11,985,592 – 11,985,700 |
|---|---|
| Length | 108 |
| Sequences | 3 |
| Columns | 108 |
| Reading direction | forward |
| Mean pairwise identity | 83.92 |
| Shannon entropy | 0.21257 |
| G+C content | 0.41300 |
| Mean single sequence MFE | -20.27 |
| Consensus MFE | -16.68 |
| Energy contribution | -16.57 |
| Covariance contribution | -0.11 |
| Combinations/Pair | 1.04 |
| Mean z-score | -1.54 |
| Structure conservation index | 0.82 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.34 |
| SVM RNA-class probability | 0.650946 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 11985592 108 + 22422827 AUUCUUGUAGAUACUUCUAGCGCCAACUGACCUAGUGAAUCCCGUUCACCAUUCCCGGAUGUUAAUUGAUUGCUUAGUCUAGGAAUCAAUUGCAUUAACAAGCCAGAA ...............(((.((.............((((((...))))))........(((((.((((((((.((......)).))))))))))))).....)).))). ( -21.10, z-score = -0.71, R) >droSim1.chrX 9245462 95 + 17042790 --------AGAUGCUUCUACCGC--ACUGACCUAGUGAAUCCCGUUCACCAUUCC-AUAUGUUAAUUGAUUGCUUGGC--AACAAUCAAUUGCAUAACCAAACCAGGA --------((.(((.......))--)))..(((.((((((...))))))......-.(((((.(((((((((......--..))))))))))))))........))). ( -20.20, z-score = -1.74, R) >droSec1.super_45 205556 95 - 245362 --------AGAUGCUUCUACCGC--ACUGACCUAGUGAAUCCCGUUCACCAUUCC-AUAUGUUAAUUGAUUGCUUGGC--AACAAUCAAUUGCAUAACCAAACCAGAA --------...(((.......))--)(((.....((((((...))))))......-.(((((.(((((((((......--..)))))))))))))).......))).. ( -19.50, z-score = -2.17, R) >consensus ________AGAUGCUUCUACCGC__ACUGACCUAGUGAAUCCCGUUCACCAUUCC_AUAUGUUAAUUGAUUGCUUGGC__AACAAUCAAUUGCAUAACCAAACCAGAA ........(((....)))........(((.....((((((...))))))........(((((.(((((((((..........)))))))))))))).......))).. (-16.68 = -16.57 + -0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:36:07 2011